Factsheet for GSMUA_Achr6P21220_001

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

plastid 3
nucleus 2
cytosol 1
extracellular 3
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70200	Canola	nucleus	20.07	55.45
KXG26599	Sorghum	nucleus	37.63	51.98
Bra000291.1-P	Field mustard	nucleus	31.9	43.84
CDX83499	Canola	nucleus	31.9	43.84
CDY42800	Canola	nucleus	31.54	43.35
GSMUA_Achr1P27710_001	Banana	nucleus	49.82	41.49
GSMUA_Achr8P01370_001	Banana	nucleus	46.24	39.94
KRG93108	Soybean	extracellular	40.14	39.16
TraesCS6B01G244800.1	Wheat	nucleus	39.43	36.3
TraesCS6D01G197500.1	Wheat	nucleus	39.43	35.71
TraesCS6A01G214900.1	Wheat	nucleus	40.14	35.67
Os02t0603600-01	Rice	nucleus	22.58	35.59
VIT_05s0124g00240.t01	Wine grape	plastid	43.73	34.56
Zm00001d017138_P001	Maize	nucleus	40.14	34.46
HORVU6Hr1G054910.7	Barley	nucleus	39.78	34.26
EES05388	Sorghum	nucleus	40.5	33.43
Os04t0489600-02	Rice	nucleus	44.09	33.33
PGSC0003DMT400016793	Potato	nucleus, plastid	40.86	32.76
AT2G43140.2	Thale cress	nucleus	35.84	32.36
CDY66632	Canola	cytosol, nucleus, plastid	19.0	32.12
Bra004748.1-P	Field mustard	nucleus	34.77	31.7
Solyc09g098110.2.1	Tomato	nucleus, plastid	40.5	31.65
CDY51319	Canola	nucleus, plastid	40.5	31.39
CDY17944	Canola	nucleus	34.77	31.19
Bra015456.1-P	Field mustard	nucleus, plastid	40.14	31.11
GSMUA_Achr8P32130_001	Banana	mitochondrion	46.95	31.04
CDY30384	Canola	nucleus	33.69	30.62
AT1G05805.1	Thale cress	nucleus, plastid	39.43	30.39
Bra037732.1-P	Field mustard	nucleus	32.26	29.61
CDY10149	Canola	nucleus, plastid	36.56	28.98
GSMUA_Achr7P20490_001	Banana	nucleus	33.69	26.78
GSMUA_Achr5P22310_001	Banana	nucleus	36.92	26.61
GSMUA_Achr3P11110_001	Banana	nucleus	30.47	21.57
GSMUA_Achr9P27780_001	Banana	nucleus	31.18	20.96
CDY10155	Canola	nucleus, plastid	16.49	16.31

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr6G21220_001	EnsemblPlants:GSMUA_Achr6P21220_001	EnsemblPlants:GSMUA_Achr6T21220_001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:M0T8X0	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF34
SMART:SM00353	SUPFAM:SSF47459	TMHMM:TMhelix	UniParc:UPI0002953AFF	InterPro:bHLH_dom	SEG:seg

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G21220_001]

Coordinates

chr6:-:16828661..16833778

Molecular Weight (calculated)

31802.9 Da

IEP (calculated)

9.234

GRAVY (calculated)

-0.476

Length

279 amino acids

Sequence
(BLAST)

001: MYIYIYIYIY IHTYIYIYRH TYIYIVYIKY CTQNKNPNFA RLPHWVMDHP IVVTRFVQGP ALKGFSALRD IRSFSRPGIG GVNEMASRRL KSQLSFSGTG
101: QPSQVSQIGI PEIGDNVGCS NNSDVRSGSV SQSYISSNFS IGSWDDTNSI IFSAPSSKRA KDNNGDIITM SNIESQCSLP STTLEMDTMD KYLQFQHDQV
201: PFKVRAKRGC ATHPRSISER ERRTRISEKL KSLQDLVPNM DKQTSTADML DLAIEHIKEL QSQLQVLKQE QENCKCKKA

Best Arabidopsis Sequence Match ( AT1G05805.1 )
(BLAST)

001: MYQSSSSTSS SSQRSSLPGG GGLIRYGSAP GSFLNSVVDE VIGGGSSNAR DFTGYQPSSD NFIGNFFTGA ADSSSLRSDS TTCGVNNSSD GQKQLGNNNN
101: NNSNKDIFLD RSYGGFNEIS QQHKSNDIGG GNSSGSYSLA RQRSSPADFF TYLASDKNNF SLNQPTSDYS PQGGSNGGRG HSRLKSQLSF TNHDSLARIN
201: EVNETPVHDG SGHSFSAASF GAATTDSWDD GSGSIGFTVT RPSKRSKDMD SGLFSQYSLP SDTSMNYMDN FMQLPEDSVP CKIRAKRGCA THPRSIAERE
301: RRTRISGKLK KLQDLVPNMD KQTSYSDMLD LAVQHIKGLQ HQLQNLKKDQ ENCTCGCSEK PS

Arabidopsis Description

BHLH128Transcription factor bHLH128 [Source:UniProtKB/Swiss-Prot;Acc:Q8H102]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.