Factsheet for GSMUA_Achr8P32130_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P27710_001	Banana	nucleus	63.74	80.3
GSMUA_Achr8P01370_001	Banana	nucleus	49.76	65.02
CDY70200	Canola	nucleus	13.27	55.45
KRG93108	Soybean	extracellular	34.83	51.4
GSMUA_Achr6P21220_001	Banana	vacuole	31.04	46.95
Zm00001d042482_P001	Maize	nucleus	39.34	45.86
TraesCS3D01G388700.1	Wheat	nucleus	39.57	45.63
VIT_05s0124g00240.t01	Wine grape	plastid	38.15	45.61
TraesCS3B01G426900.1	Wheat	nucleus	39.34	44.74
TraesCS3A01G395000.1	Wheat	nucleus	39.1	44.47
Os01t0900800-01	Rice	nucleus	40.52	44.19
HORVU3Hr1G089090.2	Barley	nucleus	39.57	44.18
KXG33923	Sorghum	plastid	43.6	42.2
PGSC0003DMT400016793	Potato	nucleus, plastid	34.6	41.95
CDY42800	Canola	nucleus	19.67	40.89
CDX83499	Canola	nucleus	19.43	40.39
Bra000291.1-P	Field mustard	nucleus	19.43	40.39
Solyc09g098110.2.1	Tomato	nucleus, plastid	33.89	40.06
Bra015456.1-P	Field mustard	nucleus, plastid	32.7	38.33
CDY51319	Canola	nucleus, plastid	32.46	38.06
AT1G05805.1	Thale cress	nucleus, plastid	31.99	37.29
Bra004748.1-P	Field mustard	nucleus	27.01	37.25
AT2G43140.2	Thale cress	nucleus	27.01	36.89
CDY17944	Canola	nucleus	27.01	36.66
CDY10149	Canola	nucleus, plastid	30.57	36.65
CDY30384	Canola	nucleus	26.3	36.16
Bra037732.1-P	Field mustard	nucleus	25.12	34.87
GSMUA_Achr7P20490_001	Banana	nucleus	27.73	33.33
CDY66632	Canola	cytosol, nucleus, plastid	12.8	32.73
GSMUA_Achr5P22310_001	Banana	nucleus	29.38	32.04
GSMUA_Achr3P11110_001	Banana	nucleus	28.44	30.46
CDY10155	Canola	nucleus, plastid	18.01	26.95
GSMUA_Achr9P27780_001	Banana	nucleus	25.83	26.27

Protein Annotations

EnsemblPlants:GSMUA_Achr8P32130_001	EnsemblPlants:GSMUA_Achr8T32130_001	EnsemblPlantsGene:GSMUA_Achr8G32130_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR16223	PANTHER:PTHR16223:SF33	PFAM:PF00010	PFscan:PS50888	SEG:seg
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002966A70	UniProt:M0TVG5	MapMan:15.5.32	:

Description

Putative Transcription factor bHLH128 [Source:GMGC_GENE;Acc:GSMUA_Achr8G32130_001]

Coordinates

chr8:-:33642669..33648119

Molecular Weight (calculated)

45058.8 Da

IEP (calculated)

9.597

GRAVY (calculated)

-0.569

Length

422 amino acids

Sequence
(BLAST)

001: MGKPFIIRRM PTLPYSSRYS LHCSRTRPLT LSLGSGPTHG IRSRSLIPSF PFYRRIKPLN PSPFLTRSRT FPRGAAMNQS PSGGNKSGSM GPLEGLSRYG
101: SAPGSFLSGL ADSAIAGGGG GGGEPSAVGA GSEGMVGRFF AGESSCPTSE SGCRDSAGGV GGCLQGSYRP GDLHLSAGGS LLVRHSSSPA GFFSHPLTDH
201: GVSTTRVSAN YSQTGTDSIH ASANRRLRSQ WSFSRDSLSQ ISELSIPEIG ENDTCCNSSD EAAGHAGQSY ISGNFQLGSW EDNNSIAFSA PPNKQAKDNA
301: DDMVTGLSNI ASQFSFPRTS SEMSALEKYL QVQQDSVPCR VRAKRGCATH PRSIAERERR TRISKRLRKL QDIVPNMDKQ TSTSDMLELA IQHIKELQSQ
401: VQKLKQEQAN CTCPGKQEKA GE

Best Arabidopsis Sequence Match ( AT1G05805.1 )
(BLAST)

001: MYQSSSSTSS SSQRSSLPGG GGLIRYGSAP GSFLNSVVDE VIGGGSSNAR DFTGYQPSSD NFIGNFFTGA ADSSSLRSDS TTCGVNNSSD GQKQLGNNNN
101: NNSNKDIFLD RSYGGFNEIS QQHKSNDIGG GNSSGSYSLA RQRSSPADFF TYLASDKNNF SLNQPTSDYS PQGGSNGGRG HSRLKSQLSF TNHDSLARIN
201: EVNETPVHDG SGHSFSAASF GAATTDSWDD GSGSIGFTVT RPSKRSKDMD SGLFSQYSLP SDTSMNYMDN FMQLPEDSVP CKIRAKRGCA THPRSIAERE
301: RRTRISGKLK KLQDLVPNMD KQTSYSDMLD LAVQHIKGLQ HQLQNLKKDQ ENCTCGCSEK PS

Arabidopsis Description

BHLH128Transcription factor bHLH128 [Source:UniProtKB/Swiss-Prot;Acc:Q8H102]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.