Factsheet for Solyc09g098110.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 5
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016793	Potato	nucleus, plastid	92.16	94.54
CDY70200	Canola	nucleus	17.93	63.37
KRG93108	Soybean	extracellular	45.38	56.64
VIT_05s0124g00240.t01	Wine grape	plastid	54.62	55.24
Bra000291.1-P	Field mustard	nucleus	27.73	48.77
CDX83499	Canola	nucleus	27.73	48.77
CDY42800	Canola	nucleus	27.17	47.78
AT1G05805.1	Thale cress	nucleus, plastid	46.78	46.13
KXG26599	Sorghum	nucleus	25.77	45.54
Bra015456.1-P	Field mustard	nucleus, plastid	44.54	44.17
CDY51319	Canola	nucleus, plastid	44.26	43.89
GSMUA_Achr1P27710_001	Banana	nucleus	40.34	42.99
CDY10149	Canola	nucleus, plastid	42.3	42.9
Bra004748.1-P	Field mustard	nucleus	36.69	42.81
CDY17944	Canola	nucleus	36.97	42.44
AT2G43140.2	Thale cress	nucleus	36.41	42.07
CDY30384	Canola	nucleus	35.57	41.37
GSMUA_Achr8P01370_001	Banana	nucleus	36.97	40.87
GSMUA_Achr6P21220_001	Banana	vacuole	31.65	40.5
Bra037732.1-P	Field mustard	nucleus	33.61	39.47
Zm00001d042482_P001	Maize	nucleus	39.22	38.67
TraesCS6B01G244800.1	Wheat	nucleus	32.49	38.28
TraesCS6D01G197500.1	Wheat	nucleus	32.49	37.66
TraesCS6A01G214900.1	Wheat	nucleus	32.49	36.94
HORVU6Hr1G054910.7	Barley	nucleus	32.77	36.11
TraesCS3D01G388700.1	Wheat	nucleus	36.97	36.07
Zm00001d017138_P001	Maize	nucleus	32.77	36.0
CDY66632	Canola	cytosol, nucleus, plastid	16.53	35.76
Os01t0900800-01	Rice	nucleus	38.66	35.66
EES05388	Sorghum	nucleus	33.61	35.5
TraesCS3B01G426900.1	Wheat	nucleus	36.41	35.04
HORVU3Hr1G089090.2	Barley	nucleus	36.97	34.92
TraesCS3A01G395000.1	Wheat	nucleus	36.13	34.77
CDY10155	Canola	nucleus, plastid	27.17	34.4
GSMUA_Achr8P32130_001	Banana	mitochondrion	40.06	33.89
Os02t0603600-01	Rice	nucleus	15.97	32.2
Solyc06g065040.2.1	Tomato	nucleus	22.69	31.89
KXG33923	Sorghum	plastid	38.66	31.65
Os04t0489600-02	Rice	nucleus	31.65	30.62
Solyc10g079050.1.1	Tomato	nucleus	30.81	28.95
Solyc01g086870.2.1	Tomato	nucleus	31.37	27.52
Solyc12g100140.1.1	Tomato	nucleus	30.81	24.44
Solyc11g056650.1.1	Tomato	nucleus	28.01	22.68

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0001046	GO:GO:0001228	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006366	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009987	GO:GO:0010629	GO:GO:0045944
GO:GO:0046983	GO:GO:0071215	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:K4CWY2
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF51	SMART:SM00353	SUPFAM:SSF47459
EnsemblPlantsGene:Solyc09g098110.2	EnsemblPlants:Solyc09g098110.2.1	UniParc:UPI000276C15D	InterPro:bHLH_dom	SEG:seg	:

Description

No Description!

Coordinates

chr9:-:72004219..72012046

Molecular Weight (calculated)

37938.0 Da

IEP (calculated)

8.248

GRAVY (calculated)

-0.579

Length

357 amino acids

Sequence
(BLAST)

001: MYPSSTSSSS QGSMSHTSTT AGGAGGGLTR YGSAPGSFLT TAVEAVVNGN HEFASHGSHH SHLGPSRFFQ SNLASTSLNS ESTSKAKEQS NLQRSIGFND
101: LTIGGGSGAG GGVLPTTSTT PLVRHSSSPA RFLNQLATAA GDTVSMGRGS YNPKGGGDSG RGITRLNSQL SFTTQEALSQ IAEENEDIEG TSIANGHRKS
201: THSYASASSF AMGSWEDNNS IMFSVTPSKR SKQISNDIVN GLDDGETQFQ FGLSQTALEI ASMDRLLHIP EDSVPCKIRA KRGCATHPRS IAERERRTRI
301: SGKLKKLQDL VPNMDKQTSY ADMLDLAVQH IRTLQDQVQN LNTELENCKC GCRKSSQ

Best Arabidopsis Sequence Match ( AT1G05805.1 )
(BLAST)

001: MYQSSSSTSS SSQRSSLPGG GGLIRYGSAP GSFLNSVVDE VIGGGSSNAR DFTGYQPSSD NFIGNFFTGA ADSSSLRSDS TTCGVNNSSD GQKQLGNNNN
101: NNSNKDIFLD RSYGGFNEIS QQHKSNDIGG GNSSGSYSLA RQRSSPADFF TYLASDKNNF SLNQPTSDYS PQGGSNGGRG HSRLKSQLSF TNHDSLARIN
201: EVNETPVHDG SGHSFSAASF GAATTDSWDD GSGSIGFTVT RPSKRSKDMD SGLFSQYSLP SDTSMNYMDN FMQLPEDSVP CKIRAKRGCA THPRSIAERE
301: RRTRISGKLK KLQDLVPNMD KQTSYSDMLD LAVQHIKGLQ HQLQNLKKDQ ENCTCGCSEK PS

Arabidopsis Description

BHLH128Transcription factor bHLH128 [Source:UniProtKB/Swiss-Prot;Acc:Q8H102]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.