Factsheet for TraesCS3B01G426900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G388700.1	Wheat	nucleus	93.8	95.08
TraesCS3A01G395000.1	Wheat	nucleus	93.26	93.26
HORVU3Hr1G089090.2	Barley	nucleus	92.45	90.74
Os01t0900800-01	Rice	nucleus	66.58	63.82
Zm00001d042482_P001	Maize	nucleus	61.99	63.54
KXG33923	Sorghum	plastid	63.88	54.36
CDY70200	Canola	nucleus	13.75	50.49
GSMUA_Achr1P27710_001	Banana	nucleus	44.2	48.96
GSMUA_Achr8P01370_001	Banana	nucleus	42.32	48.61
KRG93108	Soybean	extracellular	34.5	44.76
VIT_05s0124g00240.t01	Wine grape	plastid	38.27	40.23
CDY42800	Canola	nucleus	21.56	39.41
GSMUA_Achr8P32130_001	Banana	mitochondrion	44.74	39.34
TraesCS6B01G244800.1	Wheat	nucleus	31.81	38.94
Bra000291.1-P	Field mustard	nucleus	21.29	38.92
CDX83499	Canola	nucleus	21.29	38.92
PGSC0003DMT400016793	Potato	nucleus, plastid	36.12	38.51
Solyc09g098110.2.1	Tomato	nucleus, plastid	35.04	36.41
AT2G43140.2	Thale cress	nucleus	29.38	35.28
Bra004748.1-P	Field mustard	nucleus	28.57	34.64
Bra015456.1-P	Field mustard	nucleus, plastid	33.42	34.44
AT1G05805.1	Thale cress	nucleus, plastid	33.42	34.25
CDY51319	Canola	nucleus, plastid	33.15	34.17
CDY17944	Canola	nucleus	28.57	34.08
CDY30384	Canola	nucleus	27.76	33.55
CDY10149	Canola	nucleus, plastid	31.54	33.24
Bra037732.1-P	Field mustard	nucleus	26.68	32.57
TraesCS7B01G145800.1	Wheat	nucleus, plastid	30.46	29.2
CDY66632	Canola	cytosol, nucleus, plastid	12.94	29.09
TraesCS5B01G264300.1	Wheat	plastid	28.03	25.37
CDY10155	Canola	nucleus, plastid	18.33	24.11

Protein Annotations

EnsemblPlants:TraesCS3B01G426900.1	EnsemblPlantsGene:TraesCS3B01G426900	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR16223	PANTHER:PTHR16223:SF33	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chr3B:-:665340757..665344719

Molecular Weight (calculated)

39343.1 Da

IEP (calculated)

7.618

GRAVY (calculated)

-0.619

Length

371 amino acids

Sequence
(BLAST)

001: MNRPTSAHHR GMPPPPQLAR YGSAPGSFLA ALADSVSRGG GGGGGEVLSH SQSQQQHQQH QPVAAVVSRF FSGESSGLTS CESSCWTADA PPPLQRAYGG
101: SGEIHVPLPQ QQQPGLLRHS SSPAGLLSRL MADPHGNGGM GGTRGGGGMG SGYAHSHSQG GNADAMAAQQ RRLSSQWSFS RQQDMMPHIA EMGMAMPTPM
201: PPAADVGESI ATGHGGGSSD LSRSFSMSSW DDTNSNIIFS APGGGKKAKL MADGDDGMVT SFSNIDSQFG SSMDMPGMDD YLQLQQDSVA CRVRAKRGCA
301: THPRSIAERE RRTRISKRLR RLQDLVPNMD KQTNTSDMLD IAVDYIKVLQ DQIEKLKQDQ GNCSCSADQK C

Best Arabidopsis Sequence Match ( AT1G05805.1 )
(BLAST)

001: MYQSSSSTSS SSQRSSLPGG GGLIRYGSAP GSFLNSVVDE VIGGGSSNAR DFTGYQPSSD NFIGNFFTGA ADSSSLRSDS TTCGVNNSSD GQKQLGNNNN
101: NNSNKDIFLD RSYGGFNEIS QQHKSNDIGG GNSSGSYSLA RQRSSPADFF TYLASDKNNF SLNQPTSDYS PQGGSNGGRG HSRLKSQLSF TNHDSLARIN
201: EVNETPVHDG SGHSFSAASF GAATTDSWDD GSGSIGFTVT RPSKRSKDMD SGLFSQYSLP SDTSMNYMDN FMQLPEDSVP CKIRAKRGCA THPRSIAERE
301: RRTRISGKLK KLQDLVPNMD KQTSYSDMLD LAVQHIKGLQ HQLQNLKKDQ ENCTCGCSEK PS

Arabidopsis Description

BHLH128Transcription factor bHLH128 [Source:UniProtKB/Swiss-Prot;Acc:Q8H102]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.