CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042482_P001	Maize	nucleus	69.72	83.98
Os01t0900800-01	Rice	nucleus	61.24	68.99
TraesCS3D01G388700.1	Wheat	nucleus	55.05	65.57
TraesCS3B01G426900.1	Wheat	nucleus	54.36	63.88
HORVU3Hr1G089090.2	Barley	nucleus	55.28	63.76
TraesCS3A01G395000.1	Wheat	nucleus	53.67	63.07
CDY70200	Canola	nucleus	12.39	53.47
GSMUA_Achr8P01370_001	Banana	nucleus	38.07	51.39
GSMUA_Achr1P27710_001	Banana	nucleus	39.45	51.34
KXG26599	Sorghum	nucleus	22.25	48.02
KRG93108	Soybean	extracellular	29.59	45.1
GSMUA_Achr8P32130_001	Banana	mitochondrion	42.2	43.6
VIT_05s0124g00240.t01	Wine grape	plastid	33.95	41.93
PGSC0003DMT400016793	Potato	nucleus, plastid	31.88	39.94
CDY42800	Canola	nucleus	18.12	38.92
Bra000291.1-P	Field mustard	nucleus	18.12	38.92
CDX83499	Canola	nucleus	18.12	38.92
Solyc09g098110.2.1	Tomato	nucleus, plastid	31.65	38.66
Bra015456.1-P	Field mustard	nucleus, plastid	30.5	36.94
CDY51319	Canola	nucleus, plastid	30.28	36.67
EES05388	Sorghum	nucleus	27.75	35.8
CDY10149	Canola	nucleus, plastid	28.9	35.8
AT1G05805.1	Thale cress	nucleus, plastid	29.59	35.64
Bra004748.1-P	Field mustard	nucleus	24.54	34.97
AT2G43140.2	Thale cress	nucleus	24.54	34.63
CDY17944	Canola	nucleus	24.54	34.41
CDY30384	Canola	nucleus	23.85	33.88
Bra037732.1-P	Field mustard	nucleus	22.94	32.89
CDY66632	Canola	cytosol, nucleus, plastid	11.47	30.3
CDY10155	Canola	nucleus, plastid	17.2	26.6
OQU80938	Sorghum	nucleus	27.75	26.02
KXG35904	Sorghum	nucleus, plastid	24.77	24.32

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A1B6Q7M4	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:KXG33923
ProteinID:KXG33923	ProteinID:KXG33923.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF33
SMART:SM00353	EnsemblPlantsGene:SORBI_3003G391100	SUPFAM:SSF47459	UniParc:UPI00081AB480	InterPro:bHLH_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:70238659..70242908

Molecular Weight (calculated)

46493.5 Da

IEP (calculated)

9.274

GRAVY (calculated)

-0.660

Length

436 amino acids

Sequence
(BLAST)

001: MIHPPWPRRP ELKSSSHRAR TTTARASASL AQSHAPSSQK SSGQARQGEQ STRAAATQHI TIHERSPAYS RQQPAMNLNR LTPAHHGAMR PPSVQGQGLA
101: RYGSAPGSLL AAIAESVTRG DPAPPPPPVS RFYSAESSGL TSCESSCRTD GGGGGRPPPL ERAYGGSGEI RVPPPPQQQH PLAASTLFRH SSSPAGLLSR
201: LMADPHGMAA TGGGMGSYPQ VGSDAAMGHG HRQLSSQWSF SRQDLPQISE MGMIPDIGES IVAGGCNSSS EGGGGGATQA QSSSYLSRNF SVSSWDDTNS
301: IMFSSPSKKP KVDPADDMVT SFSNIDSQFG LSNSSLEMSG MDDYLQMQQD SVACRVRAKR GCATHPRSIA ERERRTRISK RLKKLQDLVP NMDKQTNTSD
401: MLDLAVDYIK ELKDRVEKLK HDQANCCCLG VANKGC

Best Arabidopsis Sequence Match ( AT1G05805.1 )
(BLAST)

001: MYQSSSSTSS SSQRSSLPGG GGLIRYGSAP GSFLNSVVDE VIGGGSSNAR DFTGYQPSSD NFIGNFFTGA ADSSSLRSDS TTCGVNNSSD GQKQLGNNNN
101: NNSNKDIFLD RSYGGFNEIS QQHKSNDIGG GNSSGSYSLA RQRSSPADFF TYLASDKNNF SLNQPTSDYS PQGGSNGGRG HSRLKSQLSF TNHDSLARIN
201: EVNETPVHDG SGHSFSAASF GAATTDSWDD GSGSIGFTVT RPSKRSKDMD SGLFSQYSLP SDTSMNYMDN FMQLPEDSVP CKIRAKRGCA THPRSIAERE
301: RRTRISGKLK KLQDLVPNMD KQTSYSDMLD LAVQHIKGLQ HQLQNLKKDQ ENCTCGCSEK PS

Arabidopsis Description

BHLH128Transcription factor bHLH128 [Source:UniProtKB/Swiss-Prot;Acc:Q8H102]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.