CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 6
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020932_P001	Maize	nucleus	80.86	87.99
Zm00001d006022_P001	Maize	nucleus, plastid	79.95	87.44
Os09t0487900-01	Rice	nucleus	61.26	67.83
TraesCS5A01G264800.1	Wheat	plastid	59.46	64.55
TraesCS5B01G264300.1	Wheat	plastid	59.23	64.15
TraesCS5D01G272800.1	Wheat	plastid	59.23	63.37
KRH38466	Soybean	nucleus	10.59	55.95
OQU80938	Sorghum	nucleus	55.41	52.9
HORVU5Hr1G073170.5	Barley	cytosol, nucleus, plastid	19.82	48.09
VIT_06s0004g01740.t01	Wine grape	nucleus	30.86	46.13
VIT_08s0007g07810.t01	Wine grape	nucleus	37.39	42.13
KRH71888	Soybean	nucleus, plastid	34.68	40.74
KRH23160	Soybean	nucleus	36.94	40.2
GSMUA_Achr3P11110_001	Banana	nucleus	35.14	39.59
PGSC0003DMT400021062	Potato	nucleus	33.11	38.68
Bra004678.1-P	Field mustard	nucleus, plastid	28.15	38.34
KRH33007	Soybean	nucleus, plastid	33.11	38.28
CDX79884	Canola	nucleus, plastid	27.93	37.92
Solyc10g079050.1.1	Tomato	nucleus	32.43	37.89
CDY53498	Canola	nucleus, plastid	27.7	37.85
CDY14822	Canola	nucleus	29.05	37.39
GSMUA_Achr9P27780_001	Banana	nucleus	34.68	37.11
VIT_13s0064g01290.t01	Wine grape	nucleus, plastid	31.98	37.08
CDY47961	Canola	nucleus	29.05	37.07
AT2G42280.3	Thale cress	nucleus	29.95	36.94
KRH24679	Soybean	nucleus	34.46	36.87
Bra016886.1-P	Field mustard	nucleus	28.83	36.78
KXG26599	Sorghum	nucleus	16.67	36.63
KRH29679	Soybean	nucleus	34.46	36.6
KRG95337	Soybean	nucleus	31.08	36.03
KRH67021	Soybean	nucleus	31.31	35.92
PGSC0003DMT400065029	Potato	nucleus	31.31	35.01
KRH10175	Soybean	nucleus	31.76	34.22
Solyc01g086870.2.1	Tomato	nucleus	30.63	33.42
AT1G51140.1	Thale cress	nucleus	28.38	33.25
Bra018896.1-P	Field mustard	nucleus	26.13	32.13
CDY25213	Canola	nucleus	26.13	31.87
CDY22828	Canola	nucleus	25.9	31.86
EES05388	Sorghum	nucleus	23.87	31.36
KRH27501	Soybean	nucleus	30.18	30.88
KRH20846	Soybean	nucleus	30.41	30.82
Solyc12g100140.1.1	Tomato	nucleus	30.41	30.0
PGSC0003DMT400056716	Potato	nucleus	28.83	29.02
Solyc11g056650.1.1	Tomato	nucleus	28.6	28.8
KRH43476	Soybean	nucleus	29.05	28.67
PGSC0003DMT400061284	Potato	nucleus	30.41	27.61
KRH13908	Soybean	extracellular, nucleus	27.7	26.97
KXG33923	Sorghum	plastid	24.32	24.77

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A1B6QDB3	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:KXG35904
ProteinID:KXG35904	ProteinID:KXG35904.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF55
SMART:SM00353	EnsemblPlantsGene:SORBI_3002G246600	SUPFAM:SSF47459	UniParc:UPI0001C80E49	InterPro:bHLH_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:63474361..63477141

Molecular Weight (calculated)

46241.5 Da

IEP (calculated)

8.378

GRAVY (calculated)

-0.449

Length

444 amino acids

Sequence
(BLAST)

001: MYGAPVPKDL NLPAAALPQP TTRAGARTPP HQQQQMSSPG LLRYRSAPST LLGEVMCGDQ DFPAAAAAAG GAGAGHGPPP DHAAAADNVL ARFLAGHHHC
101: SEARDCKPPR PAASAHHFMD EAAAAAASMA ASQQQQLMYQ SSQQQMAAME GLYRNVSSGG TEHGAAVGGA GNNSLIRQSS SPAGFLSHLN MDNGYGSMLR
201: AGMAGGGFRT NGAVSDARLK GQLSFSSRQG SVMSQISEVG SEELDGGSSP ETAAGSNGSG APRGYSGIPG YTMGVSPGAW TDEPSPSPTS GAKRPRDFAG
301: PVPQNVHQQP LAPQLSLPSG NNGGGKPAAA SAEMAAIEKF LQFQDAVPCK IRAKRGCATH PRSIAERVRR TKISERIRKL QELVPNMEKQ TNTADMLDLA
401: VDYIKDLQKQ VKELECTIQL SGRPEPSEML PSSRFALWLT AGVT

Best Arabidopsis Sequence Match ( AT2G42280.1 )
(BLAST)

001: MDSNNHLYDP NPTGSGLLRF RSAPSSVLAA FVDDDKIGFD SDRLLSRFVT SNGVNGDLGS PKFEDKSPVS LTNTSVSYAA TLPPPPQLEP SSFLGLPPHY
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G42280]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.