Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g086870.2.1 | Tomato | nucleus | 94.46 | 92.14 |
| Zm00001d023444_P001 | Maize | cytosol | 7.05 | 59.57 |
| Zm00001d051122_P001 | Maize | nucleus | 20.15 | 52.63 |
| VIT_13s0064g01290.t01 | Wine grape | nucleus, plastid | 42.32 | 43.86 |
| HORVU5Hr1G073170.5 | Barley | cytosol, nucleus, plastid | 18.89 | 40.98 |
| HORVU7Hr1G050530.1 | Barley | cytosol | 26.7 | 39.41 |
| Os08t0506700-01 | Rice | nucleus | 38.79 | 38.6 |
| Zm00001d006578_P001 | Maize | nucleus | 35.52 | 38.42 |
| TraesCS7A01G245800.1 | Wheat | nucleus | 37.03 | 38.38 |
| TraesCS7D01G244300.1 | Wheat | nucleus, plastid | 37.28 | 38.34 |
| GSMUA_Achr5P22310_001 | Banana | nucleus | 37.28 | 38.24 |
| TraesCS7B01G145800.1 | Wheat | nucleus, plastid | 37.28 | 38.24 |
| Zm00001d031441_P001 | Maize | nucleus | 36.02 | 37.63 |
| GSMUA_Achr7P20490_001 | Banana | nucleus | 33.25 | 37.61 |
| PGSC0003DMT400021062 | Potato | nucleus | 34.51 | 36.05 |
| KRH27501 | Soybean | nucleus | 39.29 | 35.94 |
| KRH20846 | Soybean | nucleus | 39.04 | 35.39 |
| Zm00001d021748_P001 | Maize | plastid | 33.25 | 35.29 |
| PGSC0003DMT400080418 | Potato | mitochondrion, nucleus | 22.92 | 35.0 |
| Zm00001d006022_P001 | Maize | nucleus, plastid | 35.26 | 34.48 |
| Os09t0487900-01 | Rice | nucleus | 34.51 | 34.16 |
| Zm00001d020932_P001 | Maize | nucleus | 35.01 | 34.07 |
| KRH43476 | Soybean | nucleus | 38.29 | 33.78 |
| TraesCS5D01G272800.1 | Wheat | plastid | 35.01 | 33.49 |
| GSMUA_Achr9P27780_001 | Banana | nucleus | 35.01 | 33.49 |
| TraesCS5B01G264300.1 | Wheat | plastid | 34.51 | 33.41 |
| KRH13908 | Soybean | extracellular, nucleus | 37.78 | 32.89 |
| TraesCS5A01G264800.1 | Wheat | plastid | 33.5 | 32.52 |
| PGSC0003DMT400016793 | Potato | nucleus, plastid | 28.21 | 32.18 |
| GSMUA_Achr3P11110_001 | Banana | nucleus | 31.74 | 31.98 |
| OQU80938 | Sorghum | nucleus | 37.28 | 31.83 |
| KXG35904 | Sorghum | nucleus, plastid | 35.01 | 31.31 |
| HORVU2Hr1G073240.1 | Barley | cytosol | 12.85 | 31.1 |
| PGSC0003DMT400056716 | Potato | nucleus | 34.26 | 30.84 |
| PGSC0003DMT400061284 | Potato | nucleus | 36.52 | 29.65 |
| HORVU7Hr1G047180.1 | Barley | plastid | 16.62 | 26.29 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400065029 | EnsemblPlantsGene:PGSC0003DMG400025263 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR16223 | PANTHER:PTHR16223:SF69 | PFAM:PF00010 | PFscan:PS50888 | PGSC:PGSC0003DMG400025263 | SEG:seg |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000294C40A | UniProt:M1CDA4 | MapMan:15.5.32 | : |
Description
Basic helix-loop-helix family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025263]
Coordinates
chr1:+:66242576..66244946
Molecular Weight (calculated)
43517.9 Da
IEP (calculated)
6.531
GRAVY (calculated)
-0.867
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKLNNFLFS GGGGGGSSFK NGEGLEPEFF RSKEMMGSDV FQQQSQFQQS NSGGLTRYRS APSSFFAGIL DGDGNNSGEN FITGDGSSSS DSDSMFTALL
101: NSNDTTNNNG TRDLNDQNQK NQLQFGSSLK QEIGEEIEFG NENGVQNRYE NGGVSYGVGV QMQTRANLSN GNGGSNLIRQ SSSPAGFFNG FMREVGNFGA
201: SVGTNKEAST STNGFSNHIS YSTNQSSTSN FMPSIAENES WNDSSFNSLK RSRDGDLKMF SNSFSGMTNQ NDESRNYTSS GLTHHLSLPK TSSEMAAIEK
301: YLQFQQDSVP CKIRAKRGCA THPRSIAERM RRTRISERMK KLQDLFPNMD KQTNTADMLD LAVDYIKDLQ KQVQTLNDKK AKCSCTSKQL QYSNGTT
101: NSNDTTNNNG TRDLNDQNQK NQLQFGSSLK QEIGEEIEFG NENGVQNRYE NGGVSYGVGV QMQTRANLSN GNGGSNLIRQ SSSPAGFFNG FMREVGNFGA
201: SVGTNKEAST STNGFSNHIS YSTNQSSTSN FMPSIAENES WNDSSFNSLK RSRDGDLKMF SNSFSGMTNQ NDESRNYTSS GLTHHLSLPK TSSEMAAIEK
301: YLQFQQDSVP CKIRAKRGCA THPRSIAERM RRTRISERMK KLQDLFPNMD KQTNTADMLD LAVDYIKDLQ KQVQTLNDKK AKCSCTSKQL QYSNGTT
001: MDSNNHLYDP NPTGSGLLRF RSAPSSVLAA FVDDDKIGFD SDRLLSRFVT SNGVNGDLGS PKFEDKSPVS LTNTSVSYAA TLPPPPQLEP SSFLGLPPHY
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G42280]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.