Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G244300.1 | Wheat | nucleus, plastid | 97.67 | 97.93 |
| TraesCS7A01G245800.1 | Wheat | nucleus | 95.61 | 96.61 |
| HORVU7Hr1G050530.1 | Barley | cytosol | 57.88 | 83.27 |
| Os08t0506700-01 | Rice | nucleus | 80.36 | 77.94 |
| Zm00001d031441_P001 | Maize | nucleus | 67.96 | 69.21 |
| OQU80938 | Sorghum | nucleus | 75.45 | 62.8 |
| TraesCS5B01G264300.1 | Wheat | plastid | 60.98 | 57.56 |
| KRH38466 | Soybean | nucleus | 12.14 | 55.95 |
| VIT_06s0004g01740.t01 | Wine grape | nucleus | 37.21 | 48.48 |
| KRH23160 | Soybean | nucleus | 44.96 | 42.65 |
| VIT_08s0007g07810.t01 | Wine grape | nucleus | 42.64 | 41.88 |
| KRH71888 | Soybean | nucleus, plastid | 40.57 | 41.53 |
| Bra004678.1-P | Field mustard | nucleus, plastid | 33.85 | 40.18 |
| GSMUA_Achr3P11110_001 | Banana | nucleus | 40.83 | 40.1 |
| KRH24679 | Soybean | nucleus | 42.89 | 40.0 |
| CDX79884 | Canola | nucleus, plastid | 33.59 | 39.76 |
| PGSC0003DMT400021062 | Potato | nucleus | 39.02 | 39.74 |
| CDY53498 | Canola | nucleus, plastid | 33.33 | 39.69 |
| VIT_13s0064g01290.t01 | Wine grape | nucleus, plastid | 39.28 | 39.69 |
| KRH29679 | Soybean | nucleus | 42.64 | 39.47 |
| KRH33007 | Soybean | nucleus, plastid | 39.02 | 39.32 |
| Solyc10g079050.1.1 | Tomato | nucleus | 38.24 | 38.95 |
| CDY14822 | Canola | nucleus | 34.63 | 38.84 |
| CDY47961 | Canola | nucleus | 34.63 | 38.51 |
| Bra016886.1-P | Field mustard | nucleus | 34.37 | 38.22 |
| GSMUA_Achr9P27780_001 | Banana | nucleus | 40.83 | 38.07 |
| AT2G42280.3 | Thale cress | nucleus | 35.4 | 38.06 |
| PGSC0003DMT400065029 | Potato | nucleus | 38.24 | 37.28 |
| KRH67021 | Soybean | nucleus | 36.95 | 36.95 |
| KRH10175 | Soybean | nucleus | 38.76 | 36.41 |
| KRG95337 | Soybean | nucleus | 35.92 | 36.29 |
| Solyc01g086870.2.1 | Tomato | nucleus | 37.21 | 35.38 |
| TraesCS6B01G244800.1 | Wheat | nucleus | 27.39 | 34.98 |
| Bra018896.1-P | Field mustard | nucleus | 31.78 | 34.07 |
| AT1G51140.1 | Thale cress | nucleus | 33.33 | 34.04 |
| CDY22828 | Canola | nucleus | 31.27 | 33.52 |
| CDY25213 | Canola | nucleus | 31.27 | 33.24 |
| Solyc12g100140.1.1 | Tomato | nucleus | 37.73 | 32.44 |
| PGSC0003DMT400056716 | Potato | nucleus | 35.92 | 31.52 |
| Solyc11g056650.1.1 | Tomato | nucleus | 35.92 | 31.52 |
| KRH20846 | Soybean | nucleus | 35.4 | 31.28 |
| KRH27501 | Soybean | nucleus | 34.88 | 31.11 |
| PGSC0003DMT400061284 | Potato | nucleus | 38.5 | 30.47 |
| TraesCS3B01G426900.1 | Wheat | nucleus | 29.2 | 30.46 |
| KRH43476 | Soybean | nucleus | 33.59 | 28.89 |
| KRH13908 | Soybean | extracellular, nucleus | 32.56 | 27.63 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G145800.1 | EnsemblPlantsGene:TraesCS7B01G145800 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF69 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| TIGR:cd00083 | MapMan:15.5.32 | : | : | : | : |
Description
No Description!
Coordinates
chr7B:-:189496130..189498944
Molecular Weight (calculated)
41499.7 Da
IEP (calculated)
7.664
GRAVY (calculated)
-0.613
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MYGSPASKDL NQPPPPMNSS GLLRYRSAPS TLLGEVCEEF LQPGPRAASP DAAAADNVFS RFLADHQIRD TKPPPPPPVA PGAHFPDDSA MASQQQQQQM
101: MFHPQHQHHH HQQMPPVGVE GLYRTVSSAG MDSAAAATAG GASSLLRQSS SPAGFLNHLN IDNGYESMLR QGMGVGFRNG ATNAAAAVDS SGSGGGRLKG
201: QLSFSSRQGS LMSQISEMGS EDLGGSSPEG AGGSRGYIPG YPMSSGWEES SLMSENMSGM KRPRDSSEPA AQNGLAHQFS LPKTSSEMAA IEKFLQFQDA
301: VPCKIRAKRG CATHPRSIAE RVRRTRISER IRKLQELVPN MDKQTNTADM LDLAVDYIKE LQEQVKVINE SRANCTCSAS KHQQYSG
101: MFHPQHQHHH HQQMPPVGVE GLYRTVSSAG MDSAAAATAG GASSLLRQSS SPAGFLNHLN IDNGYESMLR QGMGVGFRNG ATNAAAAVDS SGSGGGRLKG
201: QLSFSSRQGS LMSQISEMGS EDLGGSSPEG AGGSRGYIPG YPMSSGWEES SLMSENMSGM KRPRDSSEPA AQNGLAHQFS LPKTSSEMAA IEKFLQFQDA
301: VPCKIRAKRG CATHPRSIAE RVRRTRISER IRKLQELVPN MDKQTNTADM LDLAVDYIKE LQEQVKVINE SRANCTCSAS KHQQYSG
001: MDSNNHLYDP NPTGSGLLRF RSAPSSVLAA FVDDDKIGFD SDRLLSRFVT SNGVNGDLGS PKFEDKSPVS LTNTSVSYAA TLPPPPQLEP SSFLGLPPHY
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G42280]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.