CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95337	Soybean	nucleus	90.18	91.12
KRH71888	Soybean	nucleus, plastid	53.75	55.03
KRH33007	Soybean	nucleus, plastid	52.71	53.12
Zm00001d023444_P001	Maize	cytosol	6.2	51.06
KRH38466	Soybean	nucleus	10.59	48.81
Zm00001d051122_P001	Maize	nucleus	19.12	48.68
VIT_08s0007g07810.t01	Wine grape	nucleus	47.55	46.7
KRH44925	Soybean	nucleus	18.86	46.5
Bra004678.1-P	Field mustard	nucleus, plastid	38.5	45.71
CDY14822	Canola	nucleus	40.31	45.22
Bra016886.1-P	Field mustard	nucleus	40.57	45.11
CDY47961	Canola	nucleus	40.57	45.11
CDX79884	Canola	nucleus, plastid	37.98	44.95
Solyc10g079050.1.1	Tomato	nucleus	43.93	44.74
AT2G42280.3	Thale cress	nucleus	41.34	44.44
PGSC0003DMT400021062	Potato	nucleus	43.41	44.21
CDY53498	Canola	nucleus, plastid	36.69	43.69
HORVU7Hr1G050530.1	Barley	cytosol	28.94	41.64
HORVU5Hr1G073170.5	Barley	cytosol, nucleus, plastid	18.35	38.8
GSMUA_Achr7P20490_001	Banana	nucleus	34.63	38.18
Os08t0506700-01	Rice	nucleus	38.76	37.59
Zm00001d006578_P001	Maize	nucleus	35.4	37.33
TraesCS7A01G245800.1	Wheat	nucleus	36.69	37.08
TraesCS7D01G244300.1	Wheat	nucleus, plastid	36.95	37.05
TraesCS7B01G145800.1	Wheat	nucleus, plastid	36.95	36.95
KRH23160	Soybean	nucleus	37.47	35.54
GSMUA_Achr5P22310_001	Banana	nucleus	35.14	35.14
KRG93108	Soybean	extracellular	25.84	34.97
Zm00001d020932_P001	Maize	nucleus	36.69	34.8
GSMUA_Achr3P11110_001	Banana	nucleus	35.4	34.77
Zm00001d006022_P001	Maize	nucleus, plastid	36.18	34.48
KRH29679	Soybean	nucleus	36.95	34.21
Os09t0487900-01	Rice	nucleus	35.4	34.16
Zm00001d031441_P001	Maize	nucleus	33.33	33.95
KRH24679	Soybean	nucleus	35.92	33.49
Zm00001d021748_P001	Maize	plastid	31.78	32.89
TraesCS5D01G272800.1	Wheat	plastid	35.14	32.77
TraesCS5B01G264300.1	Wheat	plastid	34.63	32.68
TraesCS5A01G264800.1	Wheat	plastid	33.85	32.03
GSMUA_Achr9P27780_001	Banana	nucleus	33.85	31.57
KRH20846	Soybean	nucleus	35.66	31.51
KRH27501	Soybean	nucleus	35.14	31.34
KXG35904	Sorghum	nucleus, plastid	35.92	31.31
KRH43476	Soybean	nucleus	35.92	30.89
OQU80938	Sorghum	nucleus	36.69	30.54
KRH10175	Soybean	nucleus	31.78	29.85
HORVU2Hr1G073240.1	Barley	cytosol	12.4	29.27
KRH13908	Soybean	extracellular, nucleus	34.37	29.17
HORVU7Hr1G047180.1	Barley	plastid	17.57	27.09

Protein Annotations

EntrezGene:100814652	MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:ACUP02002024	EnsemblPlantsGene:GLYMA_03G141700	GO:GO:0001046
GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	UniProt:I1JNH2	InterPro:IPR011598	InterPro:IPR036638	ProteinID:KRH67020.1
EnsemblPlants:KRH67021	ProteinID:KRH67021	ProteinID:KRH67021.1	ProteinID:KRH67022.1	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR16223	PANTHER:PTHR16223:SF67	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000233A017	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:35772533..35776280

Molecular Weight (calculated)

42867.0 Da

IEP (calculated)

9.981

GRAVY (calculated)

-0.823

Length

387 amino acids

Sequence
(BLAST)

001: MDSNSRYHVQ QQHQQPNSGL LRFRSAPTAN FKQQGEVAAN TNGNAWEGSE PFLRFLNSGD THDTTSSPTL REFVDNKVSN NSKPAKESSA SSPLSRMNSQ
101: QGYSASMLPS RSTVTSAMML GSMGIDQSAK SFDSNSLRQS SFPAGHFSNN ISFQNGYDAM KGVGNYSGVN GNDGELSLSM NRMKNHISFS SISPSSSLGM
201: LSPTSKMGTE GIRVTRPEDG RQGSCNGDAR YYGPGFPYAS WNEPSHPKRQ RSSNDELLFD SQNGEPGNQV QRLSHHLSLP RTSSEMFAMD NLLQFSDSVP
301: CKIRAKRGFA THPRSIAERV RRTRISERIR KLQELVPTMD KQTSTAEMLD LALDYIKDLQ KQFKTLSDKR AKCKCINMQK SEADRVA

Best Arabidopsis Sequence Match ( AT2G42280.1 )
(BLAST)

001: MDSNNHLYDP NPTGSGLLRF RSAPSSVLAA FVDDDKIGFD SDRLLSRFVT SNGVNGDLGS PKFEDKSPVS LTNTSVSYAA TLPPPPQLEP SSFLGLPPHY
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G42280]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.