CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41870	Canola	nucleus	64.33	41.39
CDX91761	Canola	nucleus	64.33	41.06
VIT_18s0041g00690.t01	Wine grape	mitochondrion, nucleus	65.61	41.04
Bra034421.1-P	Field mustard	nucleus	63.06	40.74
CDY28415	Canola	nucleus	63.06	40.74
CDY69278	Canola	nucleus	61.78	40.08
CDY61281	Canola	nucleus	63.06	39.44
Bra036760.1-P	Field mustard	nucleus	59.87	39.33
AT1G35460.1	Thale cress	nucleus	63.69	38.61
AT4G09180.1	Thale cress	nucleus	64.33	38.55
Solyc06g065040.2.1	Tomato	nucleus	57.96	35.83
Bra028088.1-P	Field mustard	nucleus	60.51	35.71
PGSC0003DMT400080418	Potato	mitochondrion, nucleus	56.05	33.85
KRH38466	Soybean	nucleus	13.38	25.0
KRG93108	Soybean	extracellular	43.95	24.13
KRH71888	Soybean	nucleus, plastid	51.59	21.43
KRH33007	Soybean	nucleus, plastid	50.32	20.57
KRG95337	Soybean	nucleus	46.5	19.06
KRH67021	Soybean	nucleus	46.5	18.86
KRH24679	Soybean	nucleus	49.04	18.55
KRH23160	Soybean	nucleus	47.77	18.38
KRH29679	Soybean	nucleus	48.41	18.18
KRH27501	Soybean	nucleus	43.31	15.67
KRH20846	Soybean	nucleus	43.31	15.53
KRH43476	Soybean	nucleus	43.95	15.33
KRH13908	Soybean	extracellular, nucleus	42.04	14.47
KRH10175	Soybean	nucleus	36.31	13.84

Protein Annotations

EntrezGene:100527723	MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:ACUP02004977	EMBL:BT092590	UniProt:C6T578
ncoils:Coil	EnsemblPlantsGene:GLYMA_08G239500	GO:GO:0001046	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	EnsemblPlants:KRH44925	ProteinID:KRH44925	ProteinID:KRH44925.1	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR16223	PANTHER:PTHR16223:SF104	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00005B0D18	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:20443797..20446747

Molecular Weight (calculated)

17853.2 Da

IEP (calculated)

6.515

GRAVY (calculated)

-0.678

Length

157 amino acids

Sequence
(BLAST)

001: MQPTSGGGGL ARFRSAPASW LESVLLKEEE EEEDPLSFTQ LLSTIDDAPS HSQHQLYGAA LSNKDKTPEI FMLEDSVPCR VRAKRGCATH PRSIAERVRR
101: TRISDRIRKL QELVPNMDKQ TNTADMLDEA VAYVKFLQKQ IEELSEHQRR CKCVVQE

Best Arabidopsis Sequence Match ( AT1G35460.1 )
(BLAST)

001: MQSTHISGGS SGGGGGGGGE VSRSGLSRIR SAPATWIETL LEEDEEEGLK PNLCLTELLT GNNNSGGVIT SRDDSFEFLS SVEQGLYNHH QGGGFHRQNS
101: SPADFLSGSG SGTDGYFSNF GIPANYDYLS TNVDISPTKR SRDMETQFSS QLKEEQMSGG ISGMMDMNMD KIFEDSVPCR VRAKRGCATH PRSIAERVRR
201: TRISDRIRRL QELVPNMDKQ TNTADMLEEA VEYVKALQSQ IQELTEQQKR CKCKPKEEQ

Arabidopsis Description

BHLH80Transcription factor bHLH80 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8P8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.