Factsheet for VIT_18s0041g00690.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44925	Soybean	nucleus	41.04	65.61
CDY41870	Canola	nucleus	57.77	59.43
CDX91761	Canola	nucleus	57.77	58.94
Bra036760.1-P	Field mustard	nucleus	55.78	58.58
CDY69278	Canola	nucleus	55.38	57.44
Solyc06g065040.2.1	Tomato	nucleus	57.37	56.69
Bra034421.1-P	Field mustard	nucleus	54.58	56.38
CDY28415	Canola	nucleus	54.58	56.38
AT4G09180.1	Thale cress	nucleus	58.57	56.11
AT1G35460.1	Thale cress	nucleus	57.37	55.6
CDY61281	Canola	nucleus	55.38	55.38
PGSC0003DMT400080418	Potato	mitochondrion, nucleus	54.98	53.08
Bra028088.1-P	Field mustard	nucleus	53.39	50.38
VIT_06s0004g01740.t01	Wine grape	nucleus	31.87	26.94
VIT_08s0007g07810.t01	Wine grape	nucleus	38.25	24.37
VIT_05s0124g00240.t01	Wine grape	plastid	33.86	24.08
VIT_13s0064g01290.t01	Wine grape	nucleus, plastid	35.06	22.98

Protein Annotations

EntrezGene:100252707	wikigene:100252707	MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:CCB61711	ProteinID:CCB61711.1
ncoils:Coil	UniProt:F6I3Y8	EMBL:FN596744	GO:GO:0001046	GO:GO:0001228	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006366	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100252707	wikigene:LOC100252707	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR16223	PANTHER:PTHR16223:SF104	SMART:SM00353	SUPFAM:SSF47459	TIGR:TC57711	TIGR:TC66190
UniParc:UPI0001985634	ArrayExpress:VIT_18s0041g00690	EnsemblPlantsGene:VIT_18s0041g00690	EnsemblPlants:VIT_18s0041g00690.t01	unigene:Vvi.9415	RefSeq:XP_002271390
RefSeq:XP_002271390.1	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:+:25210610..25216865

Molecular Weight (calculated)

27457.1 Da

IEP (calculated)

5.257

GRAVY (calculated)

-0.669

Length

251 amino acids

Sequence
(BLAST)

001: MQPTRGGEVN RLARFRSAPA TWLDTLLEEE EGEEEDDDSL KPTQSLTQLL AGSGGPAGGS GGYIPASDPS MFDGAGAQGF LRQSSLPTEF LSQINSSEGY
101: FSSFGIPAGF DYAASPAVDG SPTGKRAREL ESRSSSRKFS SQSKGEQSSR LTGSVASLLD VDMEKLLEDS VPCRVRAKRG CATHPRSIAE RVRRTRISDR
201: IRKLQELVPN MDKQTNTADM LEEAVEYVKF LQQKIQELSE HQKKCTCLAR E

Best Arabidopsis Sequence Match ( AT1G35460.1 )
(BLAST)

001: MQSTHISGGS SGGGGGGGGE VSRSGLSRIR SAPATWIETL LEEDEEEGLK PNLCLTELLT GNNNSGGVIT SRDDSFEFLS SVEQGLYNHH QGGGFHRQNS
101: SPADFLSGSG SGTDGYFSNF GIPANYDYLS TNVDISPTKR SRDMETQFSS QLKEEQMSGG ISGMMDMNMD KIFEDSVPCR VRAKRGCATH PRSIAERVRR
201: TRISDRIRRL QELVPNMDKQ TNTADMLEEA VEYVKALQSQ IQELTEQQKR CKCKPKEEQ

Arabidopsis Description

BHLH80Transcription factor bHLH80 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8P8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.