CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034421.1-P	Field mustard	nucleus	100.0	100.0
CDY69278	Canola	nucleus	95.88	96.28
CDY41870	Canola	nucleus	82.72	82.38
CDX91761	Canola	nucleus	83.13	82.11
CDY61281	Canola	nucleus	83.13	80.48
AT1G35460.1	Thale cress	nucleus	83.13	77.99
KRH44925	Soybean	nucleus	40.74	63.06
VIT_18s0041g00690.t01	Wine grape	mitochondrion, nucleus	56.38	54.58
Solyc06g065040.2.1	Tomato	nucleus	55.14	52.76
PGSC0003DMT400080418	Potato	mitochondrion, nucleus	53.91	50.38
CDY70200	Canola	nucleus	19.75	47.52
CDY42800	Canola	nucleus	26.34	31.53
CDX83499	Canola	nucleus	25.51	30.54
CDY53498	Canola	nucleus, plastid	36.63	27.38
CDX79884	Canola	nucleus, plastid	36.21	26.91
CDY14822	Canola	nucleus	37.04	26.09
CDY47961	Canola	nucleus	36.21	25.29
CDY17944	Canola	nucleus	30.86	24.12
CDY51319	Canola	nucleus, plastid	35.39	23.89
CDY10149	Canola	nucleus, plastid	33.74	23.3
CDY30384	Canola	nucleus	28.81	22.8
CDY25213	Canola	nucleus	31.69	21.15
CDY22828	Canola	nucleus	31.28	21.05
CDY66632	Canola	cytosol, nucleus, plastid	13.99	20.61
CDY10155	Canola	nucleus, plastid	15.23	13.12

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:A0A078GPB6	UniProt:A0A078GPB6	EnsemblPlants:CDY28415	ProteinID:CDY28415
ProteinID:CDY28415.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
EnsemblPlantsGene:GSBRNA2T00040262001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR16223	PANTHER:PTHR16223:SF104	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002547F6C	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

BnaA05g18250DBnaA05g18250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GPB6]

Coordinates

chrLK032219:+:432612..434204

Molecular Weight (calculated)

26852.3 Da

IEP (calculated)

4.932

GRAVY (calculated)

-0.811

Length

243 amino acids

Sequence
(BLAST)

001: MQSTDNGGGK GGGGEVSRGG LSRIRSAPAN WIETLLQDDE EDDLKPDLCL TELLTGNSSG ITSRDLFEFP SAVEQGLYTN QGGFHRQNSS PANFLGGSAA
101: GSDGFFSNFG IPANYDYLPP PNDDISPASK RSREFSSQLK EEQMSGGVSG MMEDKLLEDS VPFRVRAKRG CATHPRSIAE RVRRTRISDR IRRLQELVPN
201: MDKQTNTADM LDEALQYVKA LESQIQELTE QQKRCRCKPK EEN

Best Arabidopsis Sequence Match ( AT1G35460.1 )
(BLAST)

001: MQSTHISGGS SGGGGGGGGE VSRSGLSRIR SAPATWIETL LEEDEEEGLK PNLCLTELLT GNNNSGGVIT SRDDSFEFLS SVEQGLYNHH QGGGFHRQNS
101: SPADFLSGSG SGTDGYFSNF GIPANYDYLS TNVDISPTKR SRDMETQFSS QLKEEQMSGG ISGMMDMNMD KIFEDSVPCR VRAKRGCATH PRSIAERVRR
201: TRISDRIRRL QELVPNMDKQ TNTADMLEEA VEYVKALQSQ IQELTEQQKR CKCKPKEEQ

Arabidopsis Description

BHLH80Transcription factor bHLH80 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8P8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.