CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028088.1-P	Field mustard	nucleus	94.02	88.72
CDX91761	Canola	nucleus	84.46	86.18
CDY41870	Canola	nucleus	83.67	86.07
CDY28415	Canola	nucleus	80.48	83.13
CDY69278	Canola	nucleus	79.68	82.64
AT1G35460.1	Thale cress	nucleus	84.46	81.85
KRH44925	Soybean	nucleus	39.44	63.06
VIT_18s0041g00690.t01	Wine grape	mitochondrion, nucleus	55.38	55.38
Solyc06g065040.2.1	Tomato	nucleus	54.98	54.33
PGSC0003DMT400080418	Potato	mitochondrion, nucleus	53.39	51.54
CDY70200	Canola	nucleus	19.52	48.51
CDY42800	Canola	nucleus	25.5	31.53
CDX83499	Canola	nucleus	24.7	30.54
CDY53498	Canola	nucleus, plastid	34.66	26.77
CDX79884	Canola	nucleus, plastid	34.66	26.61
CDY14822	Canola	nucleus	35.46	25.8
CDY47961	Canola	nucleus	34.66	25.0
CDY17944	Canola	nucleus	30.28	24.44
CDY51319	Canola	nucleus, plastid	33.86	23.61
CDY10149	Canola	nucleus, plastid	32.27	23.01
CDY30384	Canola	nucleus	27.49	22.48
CDY25213	Canola	nucleus	31.08	21.43
CDY22828	Canola	nucleus	30.68	21.33
CDY66632	Canola	cytosol, nucleus, plastid	12.75	19.39
CDY10155	Canola	nucleus, plastid	14.34	12.77

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:A0A078JAN4	UniProt:A0A078JAN4	EnsemblPlants:CDY61281	ProteinID:CDY61281
ProteinID:CDY61281.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
EnsemblPlantsGene:GSBRNA2T00033633001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR16223	PANTHER:PTHR16223:SF104	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EDDEA4	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

BnaCnng37600DBnaCnng37600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAN4]

Coordinates

chrLK033978:+:1008..2945

Molecular Weight (calculated)

27734.4 Da

IEP (calculated)

4.736

GRAVY (calculated)

-0.757

Length

251 amino acids

Sequence
(BLAST)

001: MQSTHSGGGE GGGGGGDVSR GGLTRIRSAP ATWIETLLED DEEDDLKPNL CLTELLTGNS AGLTSPDTFE FPSSVEQGLY NHQSGFYRQN SSPADFLSGS
101: GATTDGVLSN FGIPANYDYL PPNVNISPGS KRSREIEAQF SSQMKEEQMS SGVSGMMDMN MDTLLDDSVP FRVRAKRGCA THPRSIAERM RRTRISDRIR
201: RLQELVPNMD KQTNTADMLE EAVEYVKALQ RQIQELTEQQ KRCRCTPKEE Q

Best Arabidopsis Sequence Match ( AT1G35460.1 )
(BLAST)

001: MQSTHISGGS SGGGGGGGGE VSRSGLSRIR SAPATWIETL LEEDEEEGLK PNLCLTELLT GNNNSGGVIT SRDDSFEFLS SVEQGLYNHH QGGGFHRQNS
101: SPADFLSGSG SGTDGYFSNF GIPANYDYLS TNVDISPTKR SRDMETQFSS QLKEEQMSGG ISGMMDMNMD KIFEDSVPCR VRAKRGCATH PRSIAERVRR
201: TRISDRIRRL QELVPNMDKQ TNTADMLEEA VEYVKALQSQ IQELTEQQKR CKCKPKEEQ

Arabidopsis Description

BHLH80Transcription factor bHLH80 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8P8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.