Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX91761 | Canola | nucleus | 82.24 | 86.59 |
| CDY41870 | Canola | nucleus | 81.08 | 86.07 |
| CDY61281 | Canola | nucleus | 81.85 | 84.46 |
| Bra034421.1-P | Field mustard | nucleus | 77.99 | 83.13 |
| CDY28415 | Canola | nucleus | 77.99 | 83.13 |
| CDY69278 | Canola | nucleus | 77.61 | 83.06 |
| Bra036760.1-P | Field mustard | nucleus | 76.06 | 82.43 |
| Bra028088.1-P | Field mustard | nucleus | 77.99 | 75.94 |
| AT4G09180.1 | Thale cress | nucleus | 75.29 | 74.43 |
| KRH44925 | Soybean | nucleus | 38.61 | 63.69 |
| Solyc06g065040.2.1 | Tomato | nucleus | 56.37 | 57.48 |
| VIT_18s0041g00690.t01 | Wine grape | mitochondrion, nucleus | 55.6 | 57.37 |
| PGSC0003DMT400080418 | Potato | mitochondrion, nucleus | 55.21 | 55.0 |
| AT2G43140.2 | Thale cress | nucleus | 30.5 | 25.57 |
| AT2G42280.3 | Thale cress | nucleus | 33.59 | 24.17 |
| AT1G05805.1 | Thale cress | nucleus, plastid | 33.2 | 23.76 |
| AT1G51140.1 | Thale cress | nucleus | 31.27 | 21.37 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:840438 | UniProt:A0A178WC48 | ProteinID:AAG52112.1 | ProteinID:AEE31795.1 |
| EMBL:AF411791 | EMBL:AF488612 | ArrayExpress:AT1G35460 | EnsemblPlantsGene:AT1G35460 | RefSeq:AT1G35460 | TAIR:AT1G35460 |
| RefSeq:AT1G35460-TAIR-G | EnsemblPlants:AT1G35460.1 | TAIR:AT1G35460.1 | EMBL:AY093794 | ncoils:Coil | GO:GO:0001046 |
| GO:GO:0001228 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006366 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042335 | GO:GO:0045944 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | RefSeq:NP_174776.1 | ProteinID:OAP15766.1 | PFAM:PF00010 | PO:PO:0000293 |
| PFscan:PS50888 | PANTHER:PTHR16223 | PANTHER:PTHR16223:SF104 | UniProt:Q9C8P8 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI00000AA76D | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
BHLH80Transcription factor bHLH80 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8P8]
Coordinates
chr1:+:13039660..13042159
Molecular Weight (calculated)
28528.2 Da
IEP (calculated)
5.226
GRAVY (calculated)
-0.778
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSTHISGGS SGGGGGGGGE VSRSGLSRIR SAPATWIETL LEEDEEEGLK PNLCLTELLT GNNNSGGVIT SRDDSFEFLS SVEQGLYNHH QGGGFHRQNS
101: SPADFLSGSG SGTDGYFSNF GIPANYDYLS TNVDISPTKR SRDMETQFSS QLKEEQMSGG ISGMMDMNMD KIFEDSVPCR VRAKRGCATH PRSIAERVRR
201: TRISDRIRRL QELVPNMDKQ TNTADMLEEA VEYVKALQSQ IQELTEQQKR CKCKPKEEQ
101: SPADFLSGSG SGTDGYFSNF GIPANYDYLS TNVDISPTKR SRDMETQFSS QLKEEQMSGG ISGMMDMNMD KIFEDSVPCR VRAKRGCATH PRSIAERVRR
201: TRISDRIRRL QELVPNMDKQ TNTADMLEEA VEYVKALQSQ IQELTEQQKR CKCKPKEEQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.