Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28415 | Canola | nucleus | 100.0 | 100.0 |
| CDY69278 | Canola | nucleus | 95.88 | 96.28 |
| Bra036760.1-P | Field mustard | nucleus | 77.78 | 79.08 |
| AT1G35460.1 | Thale cress | nucleus | 83.13 | 77.99 |
| Bra028088.1-P | Field mustard | nucleus | 78.6 | 71.8 |
| KRH44925 | Soybean | nucleus | 40.74 | 63.06 |
| VIT_18s0041g00690.t01 | Wine grape | mitochondrion, nucleus | 56.38 | 54.58 |
| Solyc06g065040.2.1 | Tomato | nucleus | 55.14 | 52.76 |
| PGSC0003DMT400080418 | Potato | mitochondrion, nucleus | 53.91 | 50.38 |
| Bra000291.1-P | Field mustard | nucleus | 25.51 | 30.54 |
| Bra004678.1-P | Field mustard | nucleus, plastid | 36.21 | 26.99 |
| Bra016886.1-P | Field mustard | nucleus | 36.21 | 25.29 |
| Bra004748.1-P | Field mustard | nucleus | 30.86 | 24.51 |
| Bra015456.1-P | Field mustard | nucleus, plastid | 35.39 | 23.89 |
| Bra037732.1-P | Field mustard | nucleus | 27.16 | 21.71 |
| Bra018896.1-P | Field mustard | nucleus | 31.69 | 21.33 |
Protein Annotations
| EnsemblPlants:Bra034421.1 | EnsemblPlants:Bra034421.1-P | EnsemblPlantsGene:Bra034421 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR16223 | PANTHER:PTHR16223:SF104 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002547F6C | UniProt:M4F028 | MapMan:15.5.32 | : |
Description
AT1G35460 (E=1e-067) | basic helix-loop-helix (bHLH) family protein
Coordinates
chrA05:-:13759415..13760923
Molecular Weight (calculated)
26852.3 Da
IEP (calculated)
4.932
GRAVY (calculated)
-0.811
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSTDNGGGK GGGGEVSRGG LSRIRSAPAN WIETLLQDDE EDDLKPDLCL TELLTGNSSG ITSRDLFEFP SAVEQGLYTN QGGFHRQNSS PANFLGGSAA
101: GSDGFFSNFG IPANYDYLPP PNDDISPASK RSREFSSQLK EEQMSGGVSG MMEDKLLEDS VPFRVRAKRG CATHPRSIAE RVRRTRISDR IRRLQELVPN
201: MDKQTNTADM LDEALQYVKA LESQIQELTE QQKRCRCKPK EEN
101: GSDGFFSNFG IPANYDYLPP PNDDISPASK RSREFSSQLK EEQMSGGVSG MMEDKLLEDS VPFRVRAKRG CATHPRSIAE RVRRTRISDR IRRLQELVPN
201: MDKQTNTADM LDEALQYVKA LESQIQELTE QQKRCRCKPK EEN
001: MQSTHISGGS SGGGGGGGGE VSRSGLSRIR SAPATWIETL LEEDEEEGLK PNLCLTELLT GNNNSGGVIT SRDDSFEFLS SVEQGLYNHH QGGGFHRQNS
101: SPADFLSGSG SGTDGYFSNF GIPANYDYLS TNVDISPTKR SRDMETQFSS QLKEEQMSGG ISGMMDMNMD KIFEDSVPCR VRAKRGCATH PRSIAERVRR
201: TRISDRIRRL QELVPNMDKQ TNTADMLEEA VEYVKALQSQ IQELTEQQKR CKCKPKEEQ
101: SPADFLSGSG SGTDGYFSNF GIPANYDYLS TNVDISPTKR SRDMETQFSS QLKEEQMSGG ISGMMDMNMD KIFEDSVPCR VRAKRGCATH PRSIAERVRR
201: TRISDRIRRL QELVPNMDKQ TNTADMLEEA VEYVKALQSQ IQELTEQQKR CKCKPKEEQ
Arabidopsis Description
BHLH80Transcription factor bHLH80 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8P8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.