Factsheet for Bra036760.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91761	Canola	nucleus	94.56	91.87
CDY41870	Canola	nucleus	93.72	91.8
Bra034421.1-P	Field mustard	nucleus	79.08	77.78
AT1G35460.1	Thale cress	nucleus	82.43	76.06
Bra028088.1-P	Field mustard	nucleus	84.1	75.56
KRH44925	Soybean	nucleus	39.33	59.87
VIT_18s0041g00690.t01	Wine grape	mitochondrion, nucleus	58.58	55.78
Solyc06g065040.2.1	Tomato	nucleus	54.81	51.57
PGSC0003DMT400080418	Potato	mitochondrion, nucleus	55.65	51.15
Bra000291.1-P	Field mustard	nucleus	23.85	28.08
Bra004678.1-P	Field mustard	nucleus, plastid	33.47	24.54
Bra016886.1-P	Field mustard	nucleus	33.47	22.99
Bra004748.1-P	Field mustard	nucleus	28.87	22.55
Bra037732.1-P	Field mustard	nucleus	28.03	22.04
Bra015456.1-P	Field mustard	nucleus, plastid	32.64	21.67
Bra018896.1-P	Field mustard	nucleus	31.38	20.78

Protein Annotations

EnsemblPlants:Bra036760.1	EnsemblPlants:Bra036760.1-P	EnsemblPlantsGene:Bra036760	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR16223	PANTHER:PTHR16223:SF104	PFAM:PF00010	PFscan:PS50888	SEG:seg
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002545FBD	UniProt:M4F6Q0	MapMan:15.5.32	:

Description

AT1G35460 (E=5e-075) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA08:+:7245378..7246992

Molecular Weight (calculated)

26347.7 Da

IEP (calculated)

4.892

GRAVY (calculated)

-0.656

Length

239 amino acids

Sequence
(BLAST)

001: MQSTDGDGGE GGSGEGNRGG LSRIRSAPAT WIETLLVDDE EDDLKPNLCL TELLTGSSAR DSFEFPSSAE QGLYNHQGGG FHRQNSTPAD FLSGSGAGTD
101: GYFSNFGIPA NYDYLPPNVD ISPASKRSRE IEAQFSSQMK EEQMSGGVSG MMDINMDKLL EDSVPCRVRA KRGCATHPRS IAERVRRTRI SDRIRRLQEL
201: VPNMDKQTNT ADMLEEAVEY VKALQSKIQV YFHIYHIST

Best Arabidopsis Sequence Match ( AT1G35460.1 )
(BLAST)

001: MQSTHISGGS SGGGGGGGGE VSRSGLSRIR SAPATWIETL LEEDEEEGLK PNLCLTELLT GNNNSGGVIT SRDDSFEFLS SVEQGLYNHH QGGGFHRQNS
101: SPADFLSGSG SGTDGYFSNF GIPANYDYLS TNVDISPTKR SRDMETQFSS QLKEEQMSGG ISGMMDMNMD KIFEDSVPCR VRAKRGCATH PRSIAERVRR
201: TRISDRIRRL QELVPNMDKQ TNTADMLEEA VEYVKALQSQ IQELTEQQKR CKCKPKEEQ

Arabidopsis Description

BHLH80Transcription factor bHLH80 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8P8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.