Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66632 | Canola | cytosol, nucleus, plastid | 48.37 | 89.7 |
| Bra000291.1-P | Field mustard | nucleus | 55.56 | 83.74 |
| AT2G43140.2 | Thale cress | nucleus | 82.35 | 81.55 |
| Bra037732.1-P | Field mustard | nucleus | 73.53 | 74.01 |
| KRG93108 | Soybean | extracellular | 43.79 | 46.85 |
| VIT_05s0124g00240.t01 | Wine grape | plastid | 48.04 | 41.64 |
| Bra015456.1-P | Field mustard | nucleus, plastid | 45.1 | 38.33 |
| KXG26599 | Sorghum | nucleus | 25.16 | 38.12 |
| PGSC0003DMT400016793 | Potato | nucleus, plastid | 43.14 | 37.93 |
| Solyc09g098110.2.1 | Tomato | nucleus, plastid | 42.81 | 36.69 |
| GSMUA_Achr1P27710_001 | Banana | nucleus | 39.87 | 36.42 |
| TraesCS6B01G244800.1 | Wheat | nucleus | 34.64 | 34.98 |
| GSMUA_Achr6P21220_001 | Banana | vacuole | 31.7 | 34.77 |
| TraesCS6D01G197500.1 | Wheat | nucleus | 34.64 | 34.42 |
| TraesCS6A01G214900.1 | Wheat | nucleus | 34.64 | 33.76 |
| Zm00001d017138_P001 | Maize | nucleus | 34.97 | 32.92 |
| HORVU6Hr1G054910.7 | Barley | nucleus | 33.99 | 32.1 |
| GSMUA_Achr8P01370_001 | Banana | nucleus | 33.66 | 31.89 |
| EES05388 | Sorghum | nucleus | 34.97 | 31.66 |
| Zm00001d042482_P001 | Maize | nucleus | 37.25 | 31.49 |
| Bra034421.1-P | Field mustard | nucleus | 24.51 | 30.86 |
| Os01t0900800-01 | Rice | nucleus | 38.56 | 30.49 |
| TraesCS3D01G388700.1 | Wheat | nucleus | 35.62 | 29.78 |
| Os04t0489600-02 | Rice | nucleus | 35.29 | 29.27 |
| Bra036760.1-P | Field mustard | nucleus | 22.55 | 28.87 |
| TraesCS3B01G426900.1 | Wheat | nucleus | 34.64 | 28.57 |
| TraesCS3A01G395000.1 | Wheat | nucleus | 34.31 | 28.3 |
| Bra028088.1-P | Field mustard | nucleus | 24.18 | 27.82 |
| HORVU3Hr1G089090.2 | Barley | nucleus | 34.31 | 27.78 |
| Bra004678.1-P | Field mustard | nucleus, plastid | 29.09 | 27.3 |
| GSMUA_Achr8P32130_001 | Banana | mitochondrion | 37.25 | 27.01 |
| Bra016886.1-P | Field mustard | nucleus | 30.07 | 26.44 |
| Os02t0603600-01 | Rice | nucleus | 14.71 | 25.42 |
| Bra018896.1-P | Field mustard | nucleus | 29.09 | 24.65 |
| KXG33923 | Sorghum | plastid | 34.97 | 24.54 |
Protein Annotations
| EnsemblPlants:Bra004748.1 | EnsemblPlants:Bra004748.1-P | EnsemblPlantsGene:Bra004748 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR16223 | PANTHER:PTHR16223:SF51 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002547A85 | UniProt:M4CKL3 | MapMan:15.5.32 | : |
Description
AT2G43140 (E=8e-087) | DNA binding / transcription factor
Coordinates
chrA05:-:1632280..1635921
Molecular Weight (calculated)
33211.5 Da
IEP (calculated)
7.534
GRAVY (calculated)
-0.831
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MYPPPPSSSK STVPDGGDAN NNGYDSAAGA TRDFSSLGSQ SHYNPPRQQQ DPNVVGLGDC FPDDPSNIGF DPGASSSSPL FRHRSSPAGF YDQHLPTVNG
101: FSLGRPNGGY GGGERGPSGL KPELRFSGGS SSSSHQERNS LQRISEVEAA AAAIKGVPST SMTFGNDHNN WDNSSSHISF TIDEPGKRSK TTDFFTLETQ
201: FSMPQTSLEM ARMESMMNIP EDSVPCRTRA KRGCATHPRS IAERERRTRI SGKLKKLQEL VPNMDKQTSY ADMLDLAVEH IKGLQQQVES LEKGMERCTC
301: GACKKR
101: FSLGRPNGGY GGGERGPSGL KPELRFSGGS SSSSHQERNS LQRISEVEAA AAAIKGVPST SMTFGNDHNN WDNSSSHISF TIDEPGKRSK TTDFFTLETQ
201: FSMPQTSLEM ARMESMMNIP EDSVPCRTRA KRGCATHPRS IAERERRTRI SGKLKKLQEL VPNMDKQTSY ADMLDLAVEH IKGLQQQVES LEKGMERCTC
301: GACKKR
001: MYPPNSSKST AHDGGGDADT NQYDSAAGAT RDFSSLGPQT HHHPPPQRQQ QHQQNPNLVG HYLPGEPSSI GFDSNASSSS SLFRHRSSPA GFYDQHLPTD
101: PNGFSLGRPN GGYGGGGEQG PSRLKSELRF SSGSSSHQEH NSLPRISEVE AAAAARNGVA SSSMSFGNNR TNNWDNSSSH ISFTIDQPGK RSKNSDFFTL
201: ETQYSMPQTT LEMATMENLM NIPEDSVPCR ARAKRGFATH PRSIAERERR TRISGKLKKL QELVPNMDKQ TSYADMLDLA VEHIKGLQHQ VESLEKGMER
301: CTCGACKKR
101: PNGFSLGRPN GGYGGGGEQG PSRLKSELRF SSGSSSHQEH NSLPRISEVE AAAAARNGVA SSSMSFGNNR TNNWDNSSSH ISFTIDQPGK RSKNSDFFTL
201: ETQYSMPQTT LEMATMENLM NIPEDSVPCR ARAKRGFATH PRSIAERERR TRISGKLKKL QELVPNMDKQ TSYADMLDLA VEHIKGLQHQ VESLEKGMER
301: CTCGACKKR
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQ66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.