Factsheet for Os04t0489600-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 18203134

msms PMID: 18203134 doi

G Li, BR Nallamilli, F Tan, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26599	Sorghum	nucleus	39.84	72.77
CDY70200	Canola	nucleus	14.91	54.46
Os02t0603600-01	Rice	nucleus	22.22	46.33
GSMUA_Achr6P21220_001	Banana	vacuole	33.33	44.09
Bra000291.1-P	Field mustard	nucleus	23.58	42.86
CDX83499	Canola	nucleus	23.58	42.86
CDY42800	Canola	nucleus	22.76	41.38
KRG93108	Soybean	extracellular	30.08	38.81
Bra004748.1-P	Field mustard	nucleus	29.27	35.29
VIT_05s0124g00240.t01	Wine grape	plastid	33.6	35.13
AT2G43140.2	Thale cress	nucleus	29.27	34.95
CDY17944	Canola	nucleus	29.27	34.73
PGSC0003DMT400016793	Potato	nucleus, plastid	32.25	34.2
Os01t0900800-01	Rice	nucleus	34.96	33.33
CDY51319	Canola	nucleus, plastid	31.98	32.78
Bra015456.1-P	Field mustard	nucleus, plastid	31.98	32.78
CDY66632	Canola	cytosol, nucleus, plastid	14.63	32.73
CDY30384	Canola	nucleus	27.1	32.57
Solyc09g098110.2.1	Tomato	nucleus, plastid	30.62	31.65
AT1G05805.1	Thale cress	nucleus, plastid	30.62	31.22
CDY10149	Canola	nucleus, plastid	29.0	30.4
Bra037732.1-P	Field mustard	nucleus	24.93	30.26
Os08t0506700-01	Rice	nucleus	29.27	27.07
Os09t0487900-01	Rice	nucleus	27.1	24.94
CDY10155	Canola	nucleus, plastid	15.72	20.57

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:4336235	EMBL:AK068039	ProteinID:BAF15072.1	ProteinID:BAS89828.1
ncoils:Coil	GO:GO:0001046	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
EnsemblPlantsGene:Os04g0489600	EnsemblPlants:Os04t0489600-02	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF34
UniProt:Q0JC65	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0000DD9148	RefSeq:XP_015636683.1	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

basic helix-loop-helix protein 111Hypothetical conserved gene. (Os04t0489600-01);Helix-loop-helix DNA-binding domain containing protein. (Os04t0489600-02)

Coordinates

chr4:+:24461187..24468929

Molecular Weight (calculated)

39196.4 Da

IEP (calculated)

8.930

GRAVY (calculated)

-0.761

Length

369 amino acids

Sequence
(BLAST)

001: MNPAPSRAPQ RQQRGGEMSA RYGGGLQFFA DAPPAGVEGG AATARTFFPV PGGGGEQQPP ERAMRQQHYG GGGSGAAEIS LGHGHGHGGK HHFHQFGVEA
101: KDGGGGGDQS GFLTRHNSSP PGFFSSPVMD NGFSSSARPA GSSLGEVRHG AMSSSSNNNK KMKAPLSFAS SRQGSGGLSQ ISEDGIPDLT DSIHGAAHHH
201: GRSEENVSTH DHVVRSFSSG GFSIGSWEDS NSIVFSTSTG KSGAHGNDDI IATLSNYESQ LVAPREMAGV EKYLQMQHDQ VPFRVRAKRG CATHPRSIAE
301: RERRTRISEK LRKLQALVPN MDKQTSTSDM LDLAVDHIKG LQSQLQTLKE DKEKCTCSCK QASRNRPAD

Best Arabidopsis Sequence Match ( AT1G05805.1 )
(BLAST)

001: MYQSSSSTSS SSQRSSLPGG GGLIRYGSAP GSFLNSVVDE VIGGGSSNAR DFTGYQPSSD NFIGNFFTGA ADSSSLRSDS TTCGVNNSSD GQKQLGNNNN
101: NNSNKDIFLD RSYGGFNEIS QQHKSNDIGG GNSSGSYSLA RQRSSPADFF TYLASDKNNF SLNQPTSDYS PQGGSNGGRG HSRLKSQLSF TNHDSLARIN
201: EVNETPVHDG SGHSFSAASF GAATTDSWDD GSGSIGFTVT RPSKRSKDMD SGLFSQYSLP SDTSMNYMDN FMQLPEDSVP CKIRAKRGCA THPRSIAERE
301: RRTRISGKLK KLQDLVPNMD KQTSYSDMLD LAVQHIKGLQ HQLQNLKKDQ ENCTCGCSEK PS

Arabidopsis Description

BHLH128Transcription factor bHLH128 [Source:UniProtKB/Swiss-Prot;Acc:Q8H102]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.