CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70200	Canola	nucleus	26.24	52.48
Os04t0489600-02	Rice	nucleus	72.77	39.84
GSMUA_Achr6P21220_001	Banana	vacuole	51.98	37.63
Bra000291.1-P	Field mustard	nucleus	36.63	36.45
CDX83499	Canola	nucleus	36.63	36.45
CDY42800	Canola	nucleus	36.14	35.96
EES05388	Sorghum	nucleus	57.92	34.62
KRG93108	Soybean	extracellular	41.09	29.02
VIT_05s0124g00240.t01	Wine grape	plastid	47.03	26.91
PGSC0003DMT400016793	Potato	nucleus, plastid	45.05	26.15
Solyc09g098110.2.1	Tomato	nucleus, plastid	45.54	25.77
Bra004748.1-P	Field mustard	nucleus	38.12	25.16
CDY17944	Canola	nucleus	38.12	24.76
AT2G43140.2	Thale cress	nucleus	37.62	24.6
CDY66632	Canola	cytosol, nucleus, plastid	19.31	23.64
CDY30384	Canola	nucleus	35.64	23.45
KXG33923	Sorghum	plastid	48.02	22.25
Bra037732.1-P	Field mustard	nucleus	33.17	22.04
CDY51319	Canola	nucleus, plastid	39.11	21.94
Bra015456.1-P	Field mustard	nucleus, plastid	39.11	21.94
AT1G05805.1	Thale cress	nucleus, plastid	38.61	21.55
CDY10149	Canola	nucleus, plastid	34.65	19.89
KXG35904	Sorghum	nucleus, plastid	36.63	16.67
OQU80938	Sorghum	nucleus	38.12	16.56
CDY10155	Canola	nucleus, plastid	11.88	8.51

Protein Annotations

EnsemblPlants:KXG26599	EnsemblPlantsGene:SORBI_3006G127900	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR16223
PANTHER:PTHR16223:SF34	PFAM:PF00010	PFscan:PS50888	ProteinID:KXG26599	ProteinID:KXG26599.1	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI00081ADA99	UniProt:A0A1B6PLQ4	MapMan:15.5.32	:	:

Description

hypothetical protein

Coordinates

chr6:-:49284538..49286789

Molecular Weight (calculated)

22436.5 Da

IEP (calculated)

9.227

GRAVY (calculated)

-0.707

Length

202 amino acids

Sequence
(BLAST)

001: MSGYQKKMKS PMNLSRQGAL SQFSEDGIPN DLTNNVHGIG HSEENITANN VARSFSTGFS IGSWEDPNSI VFSNPTSKAG IHNNDDIIAS ISNSYELQFG
101: VAKETAGLLQ MQQDQVPFRV RAKRGCATHP RSIAERERRT RISEKLRKLQ ALVPNMDKQT STADMLDLAV DHIRGLQSEL QVYALKEDKE KCTCRGNRPS
201: GR

Best Arabidopsis Sequence Match ( AT1G05805.1 )
(BLAST)

001: MYQSSSSTSS SSQRSSLPGG GGLIRYGSAP GSFLNSVVDE VIGGGSSNAR DFTGYQPSSD NFIGNFFTGA ADSSSLRSDS TTCGVNNSSD GQKQLGNNNN
101: NNSNKDIFLD RSYGGFNEIS QQHKSNDIGG GNSSGSYSLA RQRSSPADFF TYLASDKNNF SLNQPTSDYS PQGGSNGGRG HSRLKSQLSF TNHDSLARIN
201: EVNETPVHDG SGHSFSAASF GAATTDSWDD GSGSIGFTVT RPSKRSKDMD SGLFSQYSLP SDTSMNYMDN FMQLPEDSVP CKIRAKRGCA THPRSIAERE
301: RRTRISGKLK KLQDLVPNMD KQTSYSDMLD LAVQHIKGLQ HQLQNLKKDQ ENCTCGCSEK PS

Arabidopsis Description

BHLH128Transcription factor bHLH128 [Source:UniProtKB/Swiss-Prot;Acc:Q8H102]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.