CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017138_P001	Maize	nucleus	82.84	86.15
TraesCS6B01G244800.1	Wheat	nucleus	57.4	64.03
TraesCS6D01G197500.1	Wheat	nucleus	57.69	63.31
TraesCS6A01G214900.1	Wheat	nucleus	58.28	62.74
KXG26599	Sorghum	nucleus	34.62	57.92
CDY70200	Canola	nucleus	17.16	57.43
HORVU6Hr1G054910.7	Barley	nucleus	55.03	57.41
Os02t0603600-01	Rice	nucleus	28.99	55.37
Bra000291.1-P	Field mustard	nucleus	25.44	42.36
CDX83499	Canola	nucleus	25.44	42.36
CDY42800	Canola	nucleus	25.15	41.87
GSMUA_Achr6P21220_001	Banana	vacuole	33.43	40.5
KRG93108	Soybean	extracellular	33.43	39.51
VIT_05s0124g00240.t01	Wine grape	plastid	38.76	37.11
Bra004748.1-P	Field mustard	nucleus	31.66	34.97
AT2G43140.2	Thale cress	nucleus	31.95	34.95
CDY17944	Canola	nucleus	31.95	34.73
Solyc09g098110.2.1	Tomato	nucleus, plastid	35.5	33.61
CDY30384	Canola	nucleus	30.47	33.55
PGSC0003DMT400016793	Potato	nucleus, plastid	34.32	33.33
CDY51319	Canola	nucleus, plastid	34.91	32.78
Bra015456.1-P	Field mustard	nucleus, plastid	34.91	32.78
Bra037732.1-P	Field mustard	nucleus	28.7	31.91
CDY10149	Canola	nucleus, plastid	32.54	31.25
AT1G05805.1	Thale cress	nucleus, plastid	32.84	30.66
CDY66632	Canola	cytosol, nucleus, plastid	13.91	28.48
KXG33923	Sorghum	plastid	35.8	27.75
KXG35904	Sorghum	nucleus, plastid	31.36	23.87
OQU80938	Sorghum	nucleus	31.36	22.8
CDY10155	Canola	nucleus, plastid	15.68	18.79

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:8072429	UniProt:C5XX69	ncoils:Coil	EnsemblPlants:EES05388
ProteinID:EES05388	ProteinID:EES05388.1	GO:GO:0001046	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF51	SMART:SM00353
EnsemblPlantsGene:SORBI_3004G207200	SUPFAM:SSF47459	UniParc:UPI0001A852C1	RefSeq:XP_002452412.1	InterPro:bHLH_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:55759003..55765496

Molecular Weight (calculated)

35225.8 Da

IEP (calculated)

9.219

GRAVY (calculated)

-0.754

Length

338 amino acids

Sequence
(BLAST)

001: MRRFLPAGGG GGGGGEPSSS SSSGGQHQHG GGLAGERAAA GLRYRGGDIS LGHGHDDGHR RHQYHLGAGD AADRQNDGSM DMLARHSSSP VGFFSNLVMD
101: NGYPRSNKAG VSGGGEGQRD PSTANNNSGS SSSGRKMKPS SSGFNFAGGT QQQGQQQGAA GGHLSRISED GCASFPAGGL VGDRAAGGRG SGESSSGGAA
201: AAARSYSGGF SIVGPWEESR DIITTLGAYD PQFSGAMAGT ALEMAGMDRY MQLQQDQVPF KVRAKRGCAT HPRSIAERER RTRISEKLRK LQDLVPNMDK
301: QTSTADMLDL AVEHIKGLQS ELQALKHEQE KCTCCRKR

Best Arabidopsis Sequence Match ( AT1G05805.1 )
(BLAST)

001: MYQSSSSTSS SSQRSSLPGG GGLIRYGSAP GSFLNSVVDE VIGGGSSNAR DFTGYQPSSD NFIGNFFTGA ADSSSLRSDS TTCGVNNSSD GQKQLGNNNN
101: NNSNKDIFLD RSYGGFNEIS QQHKSNDIGG GNSSGSYSLA RQRSSPADFF TYLASDKNNF SLNQPTSDYS PQGGSNGGRG HSRLKSQLSF TNHDSLARIN
201: EVNETPVHDG SGHSFSAASF GAATTDSWDD GSGSIGFTVT RPSKRSKDMD SGLFSQYSLP SDTSMNYMDN FMQLPEDSVP CKIRAKRGCA THPRSIAERE
301: RRTRISGKLK KLQDLVPNMD KQTSYSDMLD LAVQHIKGLQ HQLQNLKKDQ ENCTCGCSEK PS

Arabidopsis Description

BHLH128Transcription factor bHLH128 [Source:UniProtKB/Swiss-Prot;Acc:Q8H102]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.