Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004748.1-P | Field mustard | nucleus | 81.55 | 82.35 |
| Bra000291.1-P | Field mustard | nucleus | 53.72 | 81.77 |
| CDX83499 | Canola | nucleus | 53.72 | 81.77 |
| CDY17944 | Canola | nucleus | 81.88 | 81.35 |
| CDY42800 | Canola | nucleus | 53.4 | 81.28 |
| CDY30384 | Canola | nucleus | 76.05 | 76.55 |
| CDY70200 | Canola | nucleus | 24.6 | 75.25 |
| CDY66632 | Canola | cytosol, nucleus, plastid | 39.81 | 74.55 |
| Bra037732.1-P | Field mustard | nucleus | 71.52 | 72.7 |
| KRG93108 | Soybean | extracellular | 43.37 | 46.85 |
| VIT_05s0124g00240.t01 | Wine grape | plastid | 48.22 | 42.21 |
| AT1G05805.1 | Thale cress | nucleus, plastid | 46.93 | 40.06 |
| PGSC0003DMT400016793 | Potato | nucleus, plastid | 42.72 | 37.93 |
| KXG26599 | Sorghum | nucleus | 24.6 | 37.62 |
| Solyc09g098110.2.1 | Tomato | nucleus, plastid | 42.07 | 36.41 |
| GSMUA_Achr6P21220_001 | Banana | vacuole | 32.36 | 35.84 |
| TraesCS6B01G244800.1 | Wheat | nucleus | 34.3 | 34.98 |
| GSMUA_Achr1P27710_001 | Banana | nucleus | 37.54 | 34.63 |
| TraesCS6D01G197500.1 | Wheat | nucleus | 34.3 | 34.42 |
| TraesCS6A01G214900.1 | Wheat | nucleus | 34.3 | 33.76 |
| GSMUA_Achr8P01370_001 | Banana | nucleus | 33.98 | 32.51 |
| HORVU6Hr1G054910.7 | Barley | nucleus | 33.66 | 32.1 |
| Zm00001d017138_P001 | Maize | nucleus | 33.66 | 32.0 |
| EES05388 | Sorghum | nucleus | 34.95 | 31.95 |
| Os01t0900800-01 | Rice | nucleus | 38.84 | 31.01 |
| Zm00001d042482_P001 | Maize | nucleus | 36.25 | 30.94 |
| AT4G09180.1 | Thale cress | nucleus | 25.89 | 30.53 |
| AT1G35460.1 | Thale cress | nucleus | 25.57 | 30.5 |
| TraesCS3D01G388700.1 | Wheat | nucleus | 35.92 | 30.33 |
| TraesCS3B01G426900.1 | Wheat | nucleus | 35.28 | 29.38 |
| Os04t0489600-02 | Rice | nucleus | 34.95 | 29.27 |
| TraesCS3A01G395000.1 | Wheat | nucleus | 34.95 | 29.11 |
| HORVU3Hr1G089090.2 | Barley | nucleus | 34.95 | 28.57 |
| GSMUA_Achr8P32130_001 | Banana | mitochondrion | 36.89 | 27.01 |
| KXG33923 | Sorghum | plastid | 34.63 | 24.54 |
| Os02t0603600-01 | Rice | nucleus | 13.92 | 24.29 |
| AT1G51140.1 | Thale cress | nucleus | 29.45 | 24.01 |
| AT2G42280.3 | Thale cress | nucleus | 27.83 | 23.89 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:818916 | UniProt:A0A178VYF7 | ProteinID:AEC10214.1 | ArrayExpress:AT2G43140 |
| EnsemblPlantsGene:AT2G43140 | RefSeq:AT2G43140 | TAIR:AT2G43140 | RefSeq:AT2G43140-TAIR-G | EnsemblPlants:AT2G43140.2 | TAIR:AT2G43140.2 |
| UniProt:F4IQ66 | GO:GO:0001046 | GO:GO:0001228 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006366 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009987 | GO:GO:0010629 | GO:GO:0045944 |
| GO:GO:0046983 | GO:GO:0071215 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | RefSeq:NP_001189738.1 |
| ProteinID:OAP10884.1 | PFAM:PF00010 | PO:PO:0000293 | PO:PO:0009005 | PFscan:PS50888 | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF51 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00005B0CEA | InterPro:bHLH_dom | SEG:seg |
Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQ66]
Coordinates
chr2:-:17931254..17935748
Molecular Weight (calculated)
33805.0 Da
IEP (calculated)
8.352
GRAVY (calculated)
-0.951
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MYPPNSSKST AHDGGGDADT NQYDSAAGAT RDFSSLGPQT HHHPPPQRQQ QHQQNPNLVG HYLPGEPSSI GFDSNASSSS SLFRHRSSPA GFYDQHLPTD
101: PNGFSLGRPN GGYGGGGEQG PSRLKSELRF SSGSSSHQEH NSLPRISEVE AAAAARNGVA SSSMSFGNNR TNNWDNSSSH ISFTIDQPGK RSKNSDFFTL
201: ETQYSMPQTT LEMATMENLM NIPEDSVPCR ARAKRGFATH PRSIAERERR TRISGKLKKL QELVPNMDKQ TSYADMLDLA VEHIKGLQHQ VESLEKGMER
301: CTCGACKKR
101: PNGFSLGRPN GGYGGGGEQG PSRLKSELRF SSGSSSHQEH NSLPRISEVE AAAAARNGVA SSSMSFGNNR TNNWDNSSSH ISFTIDQPGK RSKNSDFFTL
201: ETQYSMPQTT LEMATMENLM NIPEDSVPCR ARAKRGFATH PRSIAERERR TRISGKLKKL QELVPNMDKQ TSYADMLDLA VEHIKGLQHQ VESLEKGMER
301: CTCGACKKR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.