Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14822 | Canola | nucleus | 77.78 | 81.16 |
| Bra016886.1-P | Field mustard | nucleus | 78.33 | 81.03 |
| CDY47961 | Canola | nucleus | 78.06 | 80.75 |
| CDX79884 | Canola | nucleus, plastid | 70.56 | 77.68 |
| Bra004678.1-P | Field mustard | nucleus, plastid | 69.17 | 76.38 |
| CDY53498 | Canola | nucleus, plastid | 68.33 | 75.69 |
| Zm00001d023444_P001 | Maize | cytosol | 7.22 | 55.32 |
| Zm00001d051122_P001 | Maize | nucleus | 21.11 | 50.0 |
| KRH71888 | Soybean | nucleus, plastid | 46.11 | 43.92 |
| VIT_08s0007g07810.t01 | Wine grape | nucleus | 47.78 | 43.65 |
| KRH33007 | Soybean | nucleus, plastid | 45.83 | 42.97 |
| Solyc10g079050.1.1 | Tomato | nucleus | 45.0 | 42.63 |
| PGSC0003DMT400021062 | Potato | nucleus | 44.44 | 42.11 |
| KRH67021 | Soybean | nucleus | 44.44 | 41.34 |
| KRG95337 | Soybean | nucleus | 43.33 | 40.73 |
| HORVU5Hr1G073170.5 | Barley | cytosol, nucleus, plastid | 20.56 | 40.44 |
| Zm00001d006578_P001 | Maize | nucleus | 38.89 | 38.15 |
| HORVU7Hr1G050530.1 | Barley | cytosol | 27.78 | 37.17 |
| TraesCS7A01G245800.1 | Wheat | nucleus | 38.33 | 36.03 |
| Zm00001d031441_P001 | Maize | nucleus | 37.78 | 35.79 |
| TraesCS7D01G244300.1 | Wheat | nucleus, plastid | 38.33 | 35.75 |
| TraesCS7B01G145800.1 | Wheat | nucleus, plastid | 38.06 | 35.4 |
| Os08t0506700-01 | Rice | nucleus | 39.17 | 35.34 |
| GSMUA_Achr7P20490_001 | Banana | nucleus | 33.89 | 34.76 |
| GSMUA_Achr5P22310_001 | Banana | nucleus | 36.94 | 34.37 |
| Zm00001d021748_P001 | Maize | plastid | 35.56 | 34.22 |
| AT1G35460.1 | Thale cress | nucleus | 24.17 | 33.59 |
| AT4G09180.1 | Thale cress | nucleus | 24.17 | 33.21 |
| Os09t0487900-01 | Rice | nucleus | 36.94 | 33.17 |
| Zm00001d006022_P001 | Maize | nucleus, plastid | 37.22 | 33.0 |
| AT1G51140.1 | Thale cress | nucleus | 34.17 | 32.45 |
| TraesCS5D01G272800.1 | Wheat | plastid | 37.22 | 32.29 |
| TraesCS5B01G264300.1 | Wheat | plastid | 36.39 | 31.95 |
| Zm00001d020932_P001 | Maize | nucleus | 36.11 | 31.86 |
| OQU80938 | Sorghum | nucleus | 40.83 | 31.61 |
| TraesCS5A01G264800.1 | Wheat | plastid | 35.83 | 31.54 |
| GSMUA_Achr9P27780_001 | Banana | nucleus | 35.83 | 31.08 |
| GSMUA_Achr3P11110_001 | Banana | nucleus | 33.89 | 30.96 |
| KXG35904 | Sorghum | nucleus, plastid | 36.94 | 29.95 |
| AT1G05805.1 | Thale cress | nucleus, plastid | 29.72 | 29.56 |
| HORVU2Hr1G073240.1 | Barley | cytosol | 13.06 | 28.66 |
| AT2G43140.2 | Thale cress | nucleus | 23.89 | 27.83 |
| HORVU7Hr1G047180.1 | Barley | plastid | 19.17 | 27.49 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:818829 | UniProt:A0A1P8AZV1 | ProteinID:ANM62177.1 | ArrayExpress:AT2G42280 |
| EnsemblPlantsGene:AT2G42280 | RefSeq:AT2G42280 | TAIR:AT2G42280 | RefSeq:AT2G42280-TAIR-G | EnsemblPlants:AT2G42280.3 | Unigene:At.43726 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | RefSeq:NP_001324355.1 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR16223 | PANTHER:PTHR16223:SF67 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00084916FD | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G42280]
Coordinates
chr2:-:17611514..17613591
Molecular Weight (calculated)
40046.3 Da
IEP (calculated)
8.101
GRAVY (calculated)
-0.611
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSNNHLYDP NPTGSGLLRF RSAPSSVLAA FVDDDKIGFD SDRLLSRFVT SNGVNGDLGS PKFEDKSPVS LTNTSVSYAA TLPPPPQLEP SSFLGLPPHY
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK VKFLIIVEKK QRGLFSLLLN
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK VKFLIIVEKK QRGLFSLLLN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.