Factsheet for Solyc10g079050.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021062	Potato	nucleus	96.05	96.05
Zm00001d023444_P001	Maize	cytosol	7.37	59.57
KRH71888	Soybean	nucleus, plastid	52.37	52.65
KRH33007	Soybean	nucleus, plastid	51.58	51.04
VIT_08s0007g07810.t01	Wine grape	nucleus	51.32	49.49
Zm00001d051122_P001	Maize	nucleus	19.47	48.68
Bra004678.1-P	Field mustard	nucleus, plastid	40.79	47.55
CDY53498	Canola	nucleus, plastid	40.26	47.08
CDX79884	Canola	nucleus, plastid	40.26	46.79
CDY14822	Canola	nucleus	42.11	46.38
Bra016886.1-P	Field mustard	nucleus	41.84	45.69
CDY47961	Canola	nucleus	41.84	45.69
AT2G42280.3	Thale cress	nucleus	42.63	45.0
KRG95337	Soybean	nucleus	44.47	44.13
KRH67021	Soybean	nucleus	44.74	43.93
HORVU7Hr1G050530.1	Barley	cytosol	29.74	42.01
HORVU5Hr1G073170.5	Barley	cytosol, nucleus, plastid	19.74	40.98
Solyc06g065040.2.1	Tomato	nucleus	26.05	38.98
Zm00001d006578_P001	Maize	nucleus	37.63	38.96
TraesCS7A01G245800.1	Wheat	nucleus	38.95	38.64
TraesCS7D01G244300.1	Wheat	nucleus, plastid	38.95	38.34
TraesCS7B01G145800.1	Wheat	nucleus, plastid	38.95	38.24
Os08t0506700-01	Rice	nucleus	40.0	38.1
GSMUA_Achr5P22310_001	Banana	nucleus	38.16	37.47
GSMUA_Achr7P20490_001	Banana	nucleus	34.47	37.32
Zm00001d031441_P001	Maize	nucleus	36.05	36.05
Zm00001d020932_P001	Maize	nucleus	38.68	36.03
Zm00001d006022_P001	Maize	nucleus, plastid	38.16	35.71
GSMUA_Achr3P11110_001	Banana	nucleus	36.32	35.03
Solyc01g086870.2.1	Tomato	nucleus	37.37	34.89
Zm00001d021748_P001	Maize	plastid	34.21	34.76
Os09t0487900-01	Rice	nucleus	36.32	34.41
TraesCS5B01G264300.1	Wheat	plastid	35.79	33.17
TraesCS5D01G272800.1	Wheat	plastid	36.05	33.01
Solyc12g100140.1.1	Tomato	nucleus	38.95	32.89
Solyc11g056650.1.1	Tomato	nucleus	37.89	32.65
GSMUA_Achr9P27780_001	Banana	nucleus	35.53	32.53
TraesCS5A01G264800.1	Wheat	plastid	35.0	32.52
KXG35904	Sorghum	nucleus, plastid	37.89	32.43
OQU80938	Sorghum	nucleus	37.89	30.97
Solyc09g098110.2.1	Tomato	nucleus, plastid	28.95	30.81
HORVU2Hr1G073240.1	Barley	cytosol	12.11	28.05
HORVU7Hr1G047180.1	Barley	plastid	16.32	24.7

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:GO:0001046	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:K4D2E6	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF67
SMART:SM00353	SUPFAM:SSF47459	EnsemblPlantsGene:Solyc10g079050.1	EnsemblPlants:Solyc10g079050.1.1	UniParc:UPI000276A580	InterPro:bHLH_dom

Description

Transcription factor bHLH130 [Source:Projected from Arabidopsis thaliana (AT2G42280) UniProtKB/Swiss-Prot;Acc:Q66GR3]

Coordinates

chr10:-:60680325..60682814

Molecular Weight (calculated)

41707.9 Da

IEP (calculated)

8.472

GRAVY (calculated)

-0.731

Length

380 amino acids

Sequence
(BLAST)

001: MDSSEFEKNQ NNSGLLRFRS APSSFLENFI DGVGNNGNMG SENKGLSSKF NLDGLNNQLV SQNSLDSKVF ANLSSNSQLP PQYPRQNSTV HMVGSMEGGG
101: GYRVMGSVLG NSNNHHQGQN KLASNLMRQN SSPAGLFSQL NSLNGYATLK GGAGGYRMAT GANGDPNPSS SRLKDHFGFS SVTPSSLGML SRISEVDDES
201: SIATDLDDDE KRGNGNSEPQ LYNMGFPFNS WSDHSQFQQT LTGHKRELDS EGNKLFANAQ IEELGNRPPI LSHHLSLPKT PADIAAMEKL LHFQDTIPCK
301: IRAKRGCATH PRSIAERVRR TRISERMRKL QELVPNMDKQ TNTADMLDLA VEYIKGLQKQ YKVLTDCRAN CKCSAMQKPD

Best Arabidopsis Sequence Match ( AT2G42280.1 )
(BLAST)

001: MDSNNHLYDP NPTGSGLLRF RSAPSSVLAA FVDDDKIGFD SDRLLSRFVT SNGVNGDLGS PKFEDKSPVS LTNTSVSYAA TLPPPPQLEP SSFLGLPPHY
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G42280]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.