Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G244300.1 | Wheat | nucleus, plastid | 97.39 | 96.63 |
| TraesCS7B01G145800.1 | Wheat | nucleus, plastid | 96.61 | 95.61 |
| HORVU7Hr1G050530.1 | Barley | cytosol | 57.18 | 81.41 |
| Os08t0506700-01 | Rice | nucleus | 79.9 | 76.69 |
| Zm00001d031441_P001 | Maize | nucleus | 68.67 | 69.21 |
| OQU80938 | Sorghum | nucleus | 74.93 | 61.72 |
| TraesCS5A01G264800.1 | Wheat | plastid | 61.1 | 57.21 |
| KRH38466 | Soybean | nucleus | 12.27 | 55.95 |
| VIT_06s0004g01740.t01 | Wine grape | nucleus | 37.6 | 48.48 |
| KRH23160 | Soybean | nucleus | 44.91 | 42.16 |
| VIT_08s0007g07810.t01 | Wine grape | nucleus | 43.08 | 41.88 |
| KRH71888 | Soybean | nucleus, plastid | 40.73 | 41.27 |
| KRH24679 | Soybean | nucleus | 44.13 | 40.72 |
| Bra004678.1-P | Field mustard | nucleus, plastid | 34.46 | 40.49 |
| CDX79884 | Canola | nucleus, plastid | 34.2 | 40.06 |
| CDY53498 | Canola | nucleus, plastid | 33.94 | 40.0 |
| KRH29679 | Soybean | nucleus | 43.6 | 39.95 |
| VIT_13s0064g01290.t01 | Wine grape | nucleus, plastid | 39.95 | 39.95 |
| PGSC0003DMT400021062 | Potato | nucleus | 39.43 | 39.74 |
| GSMUA_Achr3P11110_001 | Banana | nucleus | 40.73 | 39.59 |
| KRH33007 | Soybean | nucleus, plastid | 39.43 | 39.32 |
| Solyc10g079050.1.1 | Tomato | nucleus | 38.64 | 38.95 |
| CDY14822 | Canola | nucleus | 34.99 | 38.84 |
| CDY47961 | Canola | nucleus | 34.99 | 38.51 |
| AT2G42280.3 | Thale cress | nucleus | 36.03 | 38.33 |
| Bra016886.1-P | Field mustard | nucleus | 34.73 | 38.22 |
| GSMUA_Achr9P27780_001 | Banana | nucleus | 40.47 | 37.35 |
| PGSC0003DMT400065029 | Potato | nucleus | 38.38 | 37.03 |
| KRH67021 | Soybean | nucleus | 37.08 | 36.69 |
| KRG95337 | Soybean | nucleus | 36.03 | 36.03 |
| KRH10175 | Soybean | nucleus | 38.38 | 35.68 |
| Solyc01g086870.2.1 | Tomato | nucleus | 37.08 | 34.89 |
| Bra018896.1-P | Field mustard | nucleus | 32.11 | 34.07 |
| AT1G51140.1 | Thale cress | nucleus | 33.68 | 34.04 |
| TraesCS6A01G214900.1 | Wheat | nucleus | 27.68 | 33.76 |
| CDY22828 | Canola | nucleus | 31.59 | 33.52 |
| CDY25213 | Canola | nucleus | 31.59 | 33.24 |
| Solyc12g100140.1.1 | Tomato | nucleus | 37.86 | 32.22 |
| PGSC0003DMT400056716 | Potato | nucleus | 36.03 | 31.29 |
| Solyc11g056650.1.1 | Tomato | nucleus | 36.03 | 31.29 |
| KRH20846 | Soybean | nucleus | 35.77 | 31.28 |
| KRH27501 | Soybean | nucleus | 35.25 | 31.11 |
| TraesCS3A01G395000.1 | Wheat | nucleus | 29.5 | 30.46 |
| PGSC0003DMT400061284 | Potato | nucleus | 38.64 | 30.27 |
| KRH43476 | Soybean | nucleus | 33.94 | 28.89 |
| KRH13908 | Soybean | extracellular, nucleus | 33.16 | 27.85 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G245800.1 | EnsemblPlantsGene:TraesCS7A01G245800 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF55 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| TIGR:cd00083 | MapMan:15.5.32 | : | : | : | : |
Description
No Description!
Coordinates
chr7A:+:224036060..224037993
Molecular Weight (calculated)
41244.5 Da
IEP (calculated)
7.947
GRAVY (calculated)
-0.620
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MYGSPASKDL NQPPPPTMNS SGLLRYRSAP STLLGEVCEE FLQPGPRAAS PDAAAAAHNV FSRFLADHQI RDTKPPPPPP VAPGAHFPDD SAAMASQQHQ
101: QQMMFHSQHQ QQQQQMPPVG VEGLYRTVSS AGMDAATAGG ASSLLRQSSS PAGFLNHLNM DNGYESMLRQ GMGVGFRNGA ANAAAVDSSG SRLKGQLSFS
201: SRQGSLMSQI SEMGSEDLGG SSPEGAGGSR GYIPGYPMSS GWEESSLMSE NMSGMKRPRD SSEPAAQNGL AHQFSLPKTS SEMAAIEKFL QFQDAVPCKI
301: RAKRGCATHP RSIAERVRRT RISERIRKLQ ELVPNMDKQT NTADMLDLAV DYIKELQEQV KVINESRANC TCSASKHQQQ YSG
101: QQMMFHSQHQ QQQQQMPPVG VEGLYRTVSS AGMDAATAGG ASSLLRQSSS PAGFLNHLNM DNGYESMLRQ GMGVGFRNGA ANAAAVDSSG SRLKGQLSFS
201: SRQGSLMSQI SEMGSEDLGG SSPEGAGGSR GYIPGYPMSS GWEESSLMSE NMSGMKRPRD SSEPAAQNGL AHQFSLPKTS SEMAAIEKFL QFQDAVPCKI
301: RAKRGCATHP RSIAERVRRT RISERIRKLQ ELVPNMDKQT NTADMLDLAV DYIKELQEQV KVINESRANC TCSASKHQQQ YSG
001: MDSNNHLYDP NPTGSGLLRF RSAPSSVLAA FVDDDKIGFD SDRLLSRFVT SNGVNGDLGS PKFEDKSPVS LTNTSVSYAA TLPPPPQLEP SSFLGLPPHY
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G42280]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.