CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
nucleus 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33007	Soybean	nucleus, plastid	91.27	89.84
Zm00001d023444_P001	Maize	cytosol	7.41	59.57
KRH38466	Soybean	nucleus	12.43	55.95
KRH67021	Soybean	nucleus	55.03	53.75
VIT_08s0007g07810.t01	Wine grape	nucleus	55.82	53.55
KRG95337	Soybean	nucleus	54.23	53.52
PGSC0003DMT400021062	Potato	nucleus	52.91	52.63
Solyc10g079050.1.1	Tomato	nucleus	52.65	52.37
KRH44925	Soybean	nucleus	21.43	51.59
Bra004678.1-P	Field mustard	nucleus, plastid	43.65	50.61
CDY53498	Canola	nucleus, plastid	43.12	50.15
CDX79884	Canola	nucleus, plastid	43.12	49.85
Zm00001d051122_P001	Maize	nucleus	19.84	49.34
CDY14822	Canola	nucleus	44.44	48.7
Bra016886.1-P	Field mustard	nucleus	44.44	48.28
CDY47961	Canola	nucleus	44.44	48.28
AT2G42280.3	Thale cress	nucleus	43.92	46.11
HORVU7Hr1G050530.1	Barley	cytosol	31.75	44.61
HORVU5Hr1G073170.5	Barley	cytosol, nucleus, plastid	19.84	40.98
TraesCS7A01G245800.1	Wheat	nucleus	41.27	40.73
TraesCS7D01G244300.1	Wheat	nucleus, plastid	41.53	40.67
TraesCS7B01G145800.1	Wheat	nucleus, plastid	41.53	40.57
GSMUA_Achr7P20490_001	Banana	nucleus	37.57	40.46
Os08t0506700-01	Rice	nucleus	42.33	40.1
KRH23160	Soybean	nucleus	43.12	39.95
GSMUA_Achr5P22310_001	Banana	nucleus	40.74	39.79
Zm00001d006578_P001	Maize	nucleus	38.62	39.78
KRG93108	Soybean	extracellular	29.89	39.51
Zm00001d006022_P001	Maize	nucleus, plastid	41.01	38.18
Os09t0487900-01	Rice	nucleus	39.68	37.41
Zm00001d031441_P001	Maize	nucleus	37.57	37.37
Zm00001d020932_P001	Maize	nucleus	40.21	37.25
KRH29679	Soybean	nucleus	40.48	36.6
KRH24679	Soybean	nucleus	39.95	36.39
Zm00001d021748_P001	Maize	plastid	35.71	36.1
GSMUA_Achr3P11110_001	Banana	nucleus	37.57	36.04
GSMUA_Achr9P27780_001	Banana	nucleus	38.89	35.42
KXG35904	Sorghum	nucleus, plastid	40.74	34.68
KRH20846	Soybean	nucleus	39.68	34.25
KRH10175	Soybean	nucleus	37.04	33.98
TraesCS5B01G264300.1	Wheat	plastid	36.77	33.9
TraesCS5D01G272800.1	Wheat	plastid	36.51	33.25
TraesCS5A01G264800.1	Wheat	plastid	35.98	33.25
OQU80938	Sorghum	nucleus	40.21	32.69
KRH43476	Soybean	nucleus	38.89	32.67
KRH27501	Soybean	nucleus	37.3	32.49
KRH13908	Soybean	extracellular, nucleus	36.51	30.26
HORVU2Hr1G073240.1	Barley	cytosol	12.43	28.66
HORVU7Hr1G047180.1	Barley	plastid	18.25	27.49

Protein Annotations

EntrezGene:100819605	MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:ACUP02001101	EnsemblPlantsGene:GLYMA_02G175700	GO:GO:0001046
GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	UniProt:I1JG31	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:KRH71888
ProteinID:KRH71888	ProteinID:KRH71888.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF67
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002337229	InterPro:bHLH_dom	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:28480917..28484718

Molecular Weight (calculated)

41276.3 Da

IEP (calculated)

8.585

GRAVY (calculated)

-0.710

Length

378 amino acids

Sequence
(BLAST)

001: MDSHIHHHQS YQQQNQPSSG LLRFRSAPSS LLSNLTPSFV SEDFGSSSFR ELEGNNNKGC SKDLSSMNSH KGVYGGGLPP HYPRHGSSSS TSSSAMEGSY
101: GMVSSMGLDH EAPHKGFGSS LLRQSSSPAG LFSNNNISFQ NGFATMKGVG NYGAVNGSNG ELSPCINRLK NQVSFSPRNA SSLGMLSQIS ELGSEDIEAT
201: SPDDDTKHGG NDTQHYGPGF PFGSWNDTPQ LSENISGLKR GRSGNEKMFS DVQNGELANQ VNMLSHHLSL PKTSAEMITM EKLLQFPDSV PCKIRAKRGC
301: ATHPRSIAER VRRTRISERM RKLQELVPHM DKQTNTADML DLAVEYIKDL QKQFKTLSEK RANCKCISMP KADTNQIA

Best Arabidopsis Sequence Match ( AT2G42280.1 )
(BLAST)

001: MDSNNHLYDP NPTGSGLLRF RSAPSSVLAA FVDDDKIGFD SDRLLSRFVT SNGVNGDLGS PKFEDKSPVS LTNTSVSYAA TLPPPPQLEP SSFLGLPPHY
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G42280]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.