CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67021	Soybean	nucleus	91.12	90.18
KRH71888	Soybean	nucleus, plastid	53.52	54.23
KRH33007	Soybean	nucleus, plastid	53.52	53.39
Zm00001d023444_P001	Maize	cytosol	6.27	51.06
KRH38466	Soybean	nucleus	10.44	47.62
Zm00001d051122_P001	Maize	nucleus	18.8	47.37
KRH44925	Soybean	nucleus	19.06	46.5
VIT_08s0007g07810.t01	Wine grape	nucleus	47.78	46.45
Bra004678.1-P	Field mustard	nucleus, plastid	38.64	45.4
CDX79884	Canola	nucleus, plastid	38.12	44.65
CDY14822	Canola	nucleus	40.21	44.64
Bra016886.1-P	Field mustard	nucleus	40.47	44.54
CDY47961	Canola	nucleus	40.47	44.54
Solyc10g079050.1.1	Tomato	nucleus	44.13	44.47
PGSC0003DMT400021062	Potato	nucleus	44.13	44.47
CDY53498	Canola	nucleus, plastid	37.08	43.69
AT2G42280.3	Thale cress	nucleus	40.73	43.33
HORVU7Hr1G050530.1	Barley	cytosol	28.46	40.52
HORVU5Hr1G073170.5	Barley	cytosol, nucleus, plastid	18.28	38.25
GSMUA_Achr7P20490_001	Banana	nucleus	34.99	38.18
Os08t0506700-01	Rice	nucleus	37.86	36.34
TraesCS7A01G245800.1	Wheat	nucleus	36.03	36.03
KRH23160	Soybean	nucleus	38.38	36.03
TraesCS7D01G244300.1	Wheat	nucleus, plastid	36.29	36.01
Zm00001d006578_P001	Maize	nucleus	34.46	35.97
TraesCS7B01G145800.1	Wheat	nucleus, plastid	36.29	35.92
KRG93108	Soybean	extracellular	26.63	35.66
Zm00001d020932_P001	Maize	nucleus	37.08	34.8
GSMUA_Achr3P11110_001	Banana	nucleus	35.51	34.52
GSMUA_Achr5P22310_001	Banana	nucleus	34.73	34.37
Zm00001d006022_P001	Maize	nucleus, plastid	36.29	34.24
Os09t0487900-01	Rice	nucleus	35.77	34.16
KRH29679	Soybean	nucleus	37.08	33.97
KRH24679	Soybean	nucleus	36.29	33.49
Zm00001d031441_P001	Maize	nucleus	32.9	33.16
Zm00001d021748_P001	Maize	plastid	31.33	32.09
TraesCS5D01G272800.1	Wheat	plastid	34.73	32.05
TraesCS5B01G264300.1	Wheat	plastid	33.94	31.71
GSMUA_Achr9P27780_001	Banana	nucleus	34.2	31.57
KRH20846	Soybean	nucleus	36.03	31.51
TraesCS5A01G264800.1	Wheat	plastid	33.42	31.3
KXG35904	Sorghum	nucleus, plastid	36.03	31.08
KRH43476	Soybean	nucleus	36.03	30.67
KRH27501	Soybean	nucleus	34.73	30.65
KRH10175	Soybean	nucleus	32.9	30.58
OQU80938	Sorghum	nucleus	36.29	29.89
HORVU2Hr1G073240.1	Barley	cytosol	12.79	29.88
KRH13908	Soybean	extracellular, nucleus	34.2	28.73
HORVU7Hr1G047180.1	Barley	plastid	17.49	26.69

Protein Annotations

EntrezGene:100796534	MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:ACUP02012102	EnsemblPlantsGene:GLYMA_19G144200	GO:GO:0001046
GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	UniProt:I1N948	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:KRG95337
ProteinID:KRG95337	ProteinID:KRG95337.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF67
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000233EA31	InterPro:bHLH_dom	SEG:seg	:

Description

hypothetical protein

Coordinates

chr19:+:40545431..40548350

Molecular Weight (calculated)

42216.1 Da

IEP (calculated)

9.789

GRAVY (calculated)

-0.825

Length

383 amino acids

Sequence
(BLAST)

001: MDSNSRYQVQ QQHQHNSGLL RFRSAPPANL KQQGEAANNN GSAWEGSEPL LRFLNSGDTH DTTSSPTLRE FVDNKVSNNS KPAKESSSPL SRMNSQQGYS
101: TSMLPSRSTV TSAMMLGSMG KNQSAKSFDS NLLRQSSFPA GHFSNNISFQ NGYDTMKGVG NYSGVNGNDG ELSLSMNRMK NQISFSSISP SSSLGVLSPT
201: SKIGTEGIRV TSTEDGRQGG SNGDARYFGP GFSYASWNEP SHHKRQRSSN DELLSDSQDG ELGNQVQTLS HHLSLPRTSS DMFAMDSLLQ FSDSVPCKIR
301: AKRGFATHPR SIAERVRRSR ISERIRKLQE LVPNMDKQTS TAEMLDLAVD YIKDLQKEFK TLNDKRAKCK CINMQKSEAD QVA

Best Arabidopsis Sequence Match ( AT1G51140.1 )
(BLAST)

001: MESEFQQHHF LLHDHQHQRP RNSGLIRYQS APSSYFSSFG ESIEEFLDRP TSPETERILS GFLQTTDTSD NVDSFLHHTF NSDGTEKKPP EVKTEDEDAE
101: IPVTATATAM EVVVSGDGEI SVNPEVSIGY VASVSRNKRP REKDDRTPVN NLARHNSSPA GLFSSIDVET AYAAVMKSMG GFGGSNVMST SNTEASSLTP
201: RSKLLPPTSR AMSPISEVDV KPGFSSRLPP RTLSGGFNRS FGNEGSASSK LTALARTQSG GLDQYKTKDE DSASRRPPLA HHMSLPKSLS DIEQLLSDSI
301: PCKIRAKRGC ATHPRSIAER VRRTKISERM RKLQDLVPNM DTQTNTADML DLAVQYIKDL QEQVKALEES RARCRCSSA

Arabidopsis Description

BHLH122Transcription factor bHLH122 [Source:UniProtKB/Swiss-Prot;Acc:Q9C690]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.