CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71888	Soybean	nucleus, plastid	89.84	91.27
Zm00001d023444_P001	Maize	cytosol	7.03	57.45
KRH38466	Soybean	nucleus	12.24	55.95
KRG95337	Soybean	nucleus	53.39	53.52
VIT_08s0007g07810.t01	Wine grape	nucleus	54.43	53.05
KRH67021	Soybean	nucleus	53.12	52.71
PGSC0003DMT400021062	Potato	nucleus	51.56	52.11
Solyc10g079050.1.1	Tomato	nucleus	51.04	51.58
KRH44925	Soybean	nucleus	20.57	50.32
Zm00001d051122_P001	Maize	nucleus	19.53	49.34
Bra004678.1-P	Field mustard	nucleus, plastid	41.67	49.08
CDX79884	Canola	nucleus, plastid	41.41	48.62
CDY53498	Canola	nucleus, plastid	40.62	48.0
CDY14822	Canola	nucleus	42.45	47.25
Bra016886.1-P	Field mustard	nucleus	42.45	46.84
CDY47961	Canola	nucleus	42.45	46.84
AT2G42280.3	Thale cress	nucleus	42.97	45.83
HORVU7Hr1G050530.1	Barley	cytosol	30.99	44.24
HORVU5Hr1G073170.5	Barley	cytosol, nucleus, plastid	19.53	40.98
GSMUA_Achr5P22310_001	Banana	nucleus	40.36	40.05
KRH23160	Soybean	nucleus	42.19	39.71
TraesCS7A01G245800.1	Wheat	nucleus	39.32	39.43
GSMUA_Achr7P20490_001	Banana	nucleus	35.94	39.32
KRG93108	Soybean	extracellular	29.17	39.16
TraesCS7D01G244300.1	Wheat	nucleus, plastid	39.32	39.12
TraesCS7B01G145800.1	Wheat	nucleus, plastid	39.32	39.02
Zm00001d006578_P001	Maize	nucleus	36.98	38.69
Os08t0506700-01	Rice	nucleus	39.84	38.35
KRH24679	Soybean	nucleus	39.84	36.87
KRH29679	Soybean	nucleus	40.1	36.84
Zm00001d006022_P001	Maize	nucleus, plastid	38.28	36.21
Zm00001d031441_P001	Maize	nucleus	35.68	36.05
Zm00001d020932_P001	Maize	nucleus	38.02	35.78
Os09t0487900-01	Rice	nucleus	37.24	35.66
KRH20846	Soybean	nucleus	40.1	35.16
Zm00001d021748_P001	Maize	plastid	34.11	35.03
GSMUA_Achr3P11110_001	Banana	nucleus	35.94	35.03
GSMUA_Achr9P27780_001	Banana	nucleus	36.98	34.22
KRH10175	Soybean	nucleus	35.94	33.5
KRH27501	Soybean	nucleus	37.76	33.41
KXG35904	Sorghum	nucleus, plastid	38.28	33.11
TraesCS5D01G272800.1	Wheat	plastid	35.68	33.01
KRH43476	Soybean	nucleus	38.54	32.89
TraesCS5B01G264300.1	Wheat	plastid	34.9	32.68
TraesCS5A01G264800.1	Wheat	plastid	34.38	32.27
OQU80938	Sorghum	nucleus	38.28	31.61
HORVU2Hr1G073240.1	Barley	cytosol	13.02	30.49
KRH13908	Soybean	extracellular, nucleus	36.2	30.48
HORVU7Hr1G047180.1	Barley	plastid	18.75	28.69

Protein Annotations

EntrezGene:100810203	MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:ACUP02006220	ncoils:Coil	EnsemblPlantsGene:GLYMA_10G093100
GO:GO:0001046	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	UniProt:I1L9V1	InterPro:IPR011598	InterPro:IPR036638
EnsemblPlants:KRH33007	ProteinID:KRH33007	ProteinID:KRH33007.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223
PANTHER:PTHR16223:SF67	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000233D6AB	InterPro:bHLH_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr10:-:13090971..13095514

Molecular Weight (calculated)

42034.2 Da

IEP (calculated)

8.588

GRAVY (calculated)

-0.780

Length

384 amino acids

Sequence
(BLAST)

001: MDSHIHHHHH QGYQQHQNQP SSGLLRFRSA PSSLLSNLTP FVSEDFGSSS FRELQGNNNK GCSKDLSSMN SHKGVYGGGL PPHYPRHRGS SSSAATSSSA
101: MEGSFGLVGS MGMNHETPQN GLGSSLLRHS TSPAGLFSNN NINFQNGFAT MKGVGNYGGV NGSNGELSPC INGLKNQVSF SPRNASSLGM LSQISEIGNE
201: DIEATSPDDD TRHEGNDTQQ YGPGFPYGSW NDTPQLSENL SGLKRGRSSN EKMFSDEIQN GELGNQVNML SHHLSLPKTS AEMITMKKLL QFPDSVPCKI
301: RAKRGCATHP RSIAERVRRT RISERMRKLQ ELVPNMDKQT NTADMLDLAV EYIKDLQKQF KTLSEKRAKC ECTSMQKADT NQIA

Best Arabidopsis Sequence Match ( AT2G42280.1 )
(BLAST)

001: MDSNNHLYDP NPTGSGLLRF RSAPSSVLAA FVDDDKIGFD SDRLLSRFVT SNGVNGDLGS PKFEDKSPVS LTNTSVSYAA TLPPPPQLEP SSFLGLPPHY
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G42280]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.