Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016886.1-P | Field mustard | nucleus | 99.14 | 99.14 |
| CDY14822 | Canola | nucleus | 92.53 | 93.33 |
| CDX79884 | Canola | nucleus, plastid | 75.29 | 80.12 |
| AT2G42280.3 | Thale cress | nucleus | 80.75 | 78.06 |
| CDY53498 | Canola | nucleus, plastid | 72.7 | 77.85 |
| Zm00001d023444_P001 | Maize | cytosol | 8.33 | 61.7 |
| CDY70200 | Canola | nucleus | 14.66 | 50.49 |
| Zm00001d051122_P001 | Maize | nucleus | 21.26 | 48.68 |
| KRH71888 | Soybean | nucleus, plastid | 48.28 | 44.44 |
| VIT_08s0007g07810.t01 | Wine grape | nucleus | 49.14 | 43.4 |
| KRH33007 | Soybean | nucleus, plastid | 46.84 | 42.45 |
| Solyc10g079050.1.1 | Tomato | nucleus | 45.69 | 41.84 |
| PGSC0003DMT400021062 | Potato | nucleus | 45.4 | 41.58 |
| KRH67021 | Soybean | nucleus | 45.11 | 40.57 |
| KRG95337 | Soybean | nucleus | 44.54 | 40.47 |
| HORVU5Hr1G073170.5 | Barley | cytosol, nucleus, plastid | 20.98 | 39.89 |
| HORVU7Hr1G050530.1 | Barley | cytosol | 29.02 | 37.55 |
| Zm00001d006578_P001 | Maize | nucleus | 39.37 | 37.33 |
| CDY28415 | Canola | nucleus | 25.29 | 36.21 |
| CDY69278 | Canola | nucleus | 25.0 | 35.95 |
| CDY41870 | Canola | nucleus | 24.71 | 35.25 |
| Zm00001d031441_P001 | Maize | nucleus | 38.22 | 35.0 |
| TraesCS7A01G245800.1 | Wheat | nucleus | 38.51 | 34.99 |
| CDX83499 | Canola | nucleus | 20.4 | 34.98 |
| CDY42800 | Canola | nucleus | 20.4 | 34.98 |
| TraesCS7D01G244300.1 | Wheat | nucleus, plastid | 38.79 | 34.97 |
| CDX91761 | Canola | nucleus | 24.71 | 34.96 |
| GSMUA_Achr7P20490_001 | Banana | nucleus | 35.06 | 34.76 |
| CDY61281 | Canola | nucleus | 25.0 | 34.66 |
| TraesCS7B01G145800.1 | Wheat | nucleus, plastid | 38.51 | 34.63 |
| Os08t0506700-01 | Rice | nucleus | 39.66 | 34.59 |
| GSMUA_Achr5P22310_001 | Banana | nucleus | 38.22 | 34.37 |
| CDY22828 | Canola | nucleus | 34.77 | 33.52 |
| CDY25213 | Canola | nucleus | 35.06 | 33.52 |
| Zm00001d021748_P001 | Maize | plastid | 35.92 | 33.42 |
| Zm00001d006022_P001 | Maize | nucleus, plastid | 38.22 | 32.76 |
| Zm00001d020932_P001 | Maize | nucleus | 37.64 | 32.11 |
| Os09t0487900-01 | Rice | nucleus | 36.78 | 31.92 |
| GSMUA_Achr3P11110_001 | Banana | nucleus | 35.92 | 31.73 |
| GSMUA_Achr9P27780_001 | Banana | nucleus | 37.64 | 31.57 |
| CDY51319 | Canola | nucleus, plastid | 32.18 | 31.11 |
| OQU80938 | Sorghum | nucleus | 41.38 | 30.97 |
| TraesCS5D01G272800.1 | Wheat | plastid | 36.21 | 30.36 |
| TraesCS5B01G264300.1 | Wheat | plastid | 35.63 | 30.24 |
| CDY10149 | Canola | nucleus, plastid | 30.46 | 30.11 |
| TraesCS5A01G264800.1 | Wheat | plastid | 34.77 | 29.58 |
| HORVU2Hr1G073240.1 | Barley | cytosol | 13.79 | 29.27 |
| KXG35904 | Sorghum | nucleus, plastid | 37.07 | 29.05 |
| CDY17944 | Canola | nucleus | 25.86 | 28.94 |
| CDY30384 | Canola | nucleus | 25.0 | 28.34 |
| HORVU7Hr1G047180.1 | Barley | plastid | 19.54 | 27.09 |
| CDY66632 | Canola | cytosol, nucleus, plastid | 12.36 | 26.06 |
| CDY10155 | Canola | nucleus, plastid | 15.8 | 19.5 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078IDH8 | UniProt:A0A078IDH8 | EnsemblPlants:CDY47961 | ProteinID:CDY47961 |
| ProteinID:CDY47961.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00088584001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR16223 | PANTHER:PTHR16223:SF67 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EED23B | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaA04g24390DBnaA04g24390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IDH8]
Coordinates
chrLK032747:-:3506..5913
Molecular Weight (calculated)
39034.8 Da
IEP (calculated)
8.020
GRAVY (calculated)
-0.745
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSNHLYDPN HIPSSGSGLL RFRSAPSSVL AAFVADDNKS GLDSDRLISR FARSNGPSEF EAKSPVTSVS YAATLPPPQQ QPEPSSFLGL PPHYPRQSKR
101: MMNTIGLDQF LNDHHTKPVE SNLLRQSSSP AEMFTNTTAQ NGYGSVRSLM NYEEDEQSPS SSSELRRHNS LSSRPPSSLG MLSQIPEIAS EISFQYSHWN
201: DPASFIDNLS SLKRETEDDG KLFQNGESGN RMQLLSHHLS LPNASSTASD MVTVDKFMQL QDSVPCRIRA KRGCATHPRS IAERVRRTKI SERMRKLQEL
301: VPNMDKQTNT ADMLDLAVDY IKDLQRQYKI LNENRANCKC MNKEKNLI
101: MMNTIGLDQF LNDHHTKPVE SNLLRQSSSP AEMFTNTTAQ NGYGSVRSLM NYEEDEQSPS SSSELRRHNS LSSRPPSSLG MLSQIPEIAS EISFQYSHWN
201: DPASFIDNLS SLKRETEDDG KLFQNGESGN RMQLLSHHLS LPNASSTASD MVTVDKFMQL QDSVPCRIRA KRGCATHPRS IAERVRRTKI SERMRKLQEL
301: VPNMDKQTNT ADMLDLAVDY IKDLQRQYKI LNENRANCKC MNKEKNLI
001: MDSNNHLYDP NPTGSGLLRF RSAPSSVLAA FVDDDKIGFD SDRLLSRFVT SNGVNGDLGS PKFEDKSPVS LTNTSVSYAA TLPPPPQLEP SSFLGLPPHY
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G42280]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.