Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d023444_P001 | Maize | cytosol | 7.36 | 61.7 |
| Zm00001d051122_P001 | Maize | nucleus | 21.07 | 54.61 |
| GSMUA_Achr9P27780_001 | Banana | nucleus | 52.28 | 49.64 |
| KRH38466 | Soybean | nucleus | 9.39 | 44.05 |
| HORVU5Hr1G073170.5 | Barley | cytosol, nucleus, plastid | 20.05 | 43.17 |
| HORVU7Hr1G050530.1 | Barley | cytosol | 29.19 | 42.75 |
| GSMUA_Achr7P20490_001 | Banana | nucleus | 37.31 | 41.88 |
| Zm00001d006578_P001 | Maize | nucleus | 38.32 | 41.14 |
| TraesCS7B01G145800.1 | Wheat | nucleus, plastid | 40.1 | 40.83 |
| TraesCS7A01G245800.1 | Wheat | nucleus | 39.59 | 40.73 |
| TraesCS7D01G244300.1 | Wheat | nucleus, plastid | 39.85 | 40.67 |
| Zm00001d031441_P001 | Maize | nucleus | 39.09 | 40.53 |
| VIT_06s0004g01740.t01 | Wine grape | nucleus | 30.46 | 40.4 |
| Os08t0506700-01 | Rice | nucleus | 40.1 | 39.6 |
| Zm00001d020932_P001 | Maize | nucleus | 40.86 | 39.46 |
| GSMUA_Achr5P22310_001 | Banana | nucleus | 38.32 | 39.02 |
| VIT_08s0007g07810.t01 | Wine grape | nucleus | 38.83 | 38.83 |
| Zm00001d006022_P001 | Maize | nucleus, plastid | 39.59 | 38.42 |
| Os09t0487900-01 | Rice | nucleus | 38.83 | 38.15 |
| KRH71888 | Soybean | nucleus, plastid | 36.04 | 37.57 |
| Zm00001d021748_P001 | Maize | plastid | 35.53 | 37.43 |
| Bra004678.1-P | Field mustard | nucleus, plastid | 30.71 | 37.12 |
| CDX79884 | Canola | nucleus, plastid | 30.71 | 37.0 |
| TraesCS5B01G264300.1 | Wheat | plastid | 38.32 | 36.83 |
| CDY53498 | Canola | nucleus, plastid | 30.2 | 36.62 |
| TraesCS5A01G264800.1 | Wheat | plastid | 37.82 | 36.43 |
| Solyc10g079050.1.1 | Tomato | nucleus | 35.03 | 36.32 |
| CDY14822 | Canola | nucleus | 31.47 | 35.94 |
| KRH33007 | Soybean | nucleus, plastid | 35.03 | 35.94 |
| CDY47961 | Canola | nucleus | 31.73 | 35.92 |
| TraesCS5D01G272800.1 | Wheat | plastid | 37.82 | 35.9 |
| PGSC0003DMT400021062 | Potato | nucleus | 34.52 | 35.79 |
| Bra016886.1-P | Field mustard | nucleus | 31.47 | 35.63 |
| KRG95337 | Soybean | nucleus | 34.52 | 35.51 |
| KRH67021 | Soybean | nucleus | 34.77 | 35.4 |
| KXG35904 | Sorghum | nucleus, plastid | 39.59 | 35.14 |
| VIT_13s0064g01290.t01 | Wine grape | nucleus, plastid | 34.01 | 34.99 |
| KRH24679 | Soybean | nucleus | 36.55 | 34.7 |
| OQU80938 | Sorghum | nucleus | 40.86 | 34.62 |
| KRH29679 | Soybean | nucleus | 36.29 | 34.21 |
| AT2G42280.3 | Thale cress | nucleus | 30.96 | 33.89 |
| GSMUA_Achr1P27710_001 | Banana | nucleus | 28.68 | 33.73 |
| KRH23160 | Soybean | nucleus | 34.77 | 33.58 |
| GSMUA_Achr8P01370_001 | Banana | nucleus | 27.16 | 33.13 |
| AT1G51140.1 | Thale cress | nucleus | 31.47 | 32.72 |
| Bra018896.1-P | Field mustard | nucleus | 29.7 | 32.41 |
| CDY25213 | Canola | nucleus | 29.44 | 31.87 |
| CDY22828 | Canola | nucleus | 29.19 | 31.86 |
| PGSC0003DMT400065029 | Potato | nucleus | 31.98 | 31.74 |
| HORVU2Hr1G073240.1 | Barley | cytosol | 13.2 | 31.71 |
| Solyc01g086870.2.1 | Tomato | nucleus | 32.23 | 31.2 |
| GSMUA_Achr6P21220_001 | Banana | vacuole | 21.57 | 30.47 |
| KRH20846 | Soybean | nucleus | 33.76 | 30.37 |
| KRH27501 | Soybean | nucleus | 33.25 | 30.18 |
| GSMUA_Achr8P32130_001 | Banana | mitochondrion | 30.46 | 28.44 |
| KRH10175 | Soybean | nucleus | 29.7 | 28.4 |
| KRH43476 | Soybean | nucleus | 31.73 | 27.78 |
| Solyc11g056650.1.1 | Tomato | nucleus | 30.71 | 27.44 |
| Solyc12g100140.1.1 | Tomato | nucleus | 31.22 | 27.33 |
| KRH13908 | Soybean | extracellular, nucleus | 30.71 | 26.54 |
| PGSC0003DMT400056716 | Potato | nucleus | 29.44 | 26.3 |
| HORVU7Hr1G047180.1 | Barley | plastid | 16.24 | 25.5 |
| PGSC0003DMT400061284 | Potato | nucleus | 31.22 | 25.15 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P11110_001 | EnsemblPlants:GSMUA_Achr3T11110_001 | EnsemblPlantsGene:GSMUA_Achr3G11110_001 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR16223 | PANTHER:PTHR16223:SF69 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0002954FC7 | UniProt:M0SDM8 | MapMan:15.5.32 | : | : |
Description
Putative Transcription factor bHLH130 [Source:GMGC_GENE;Acc:GSMUA_Achr3G11110_001]
Coordinates
chr3:+:8241705..8246868
Molecular Weight (calculated)
43281.4 Da
IEP (calculated)
8.577
GRAVY (calculated)
-0.623
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MAALQLWPVY VCPSADCPTL DSARRGGETK EVMYGSPLAS SSSSKGLNLS HAPTVPFGGH REEDAASELF RGHPHHHHHQ QMNPGLLRYR SAPSSLFEDP
101: CENSLRATLL SAETENKGGT VGCQRSPQFR QPPPVLSSEM VSSQQRPAYS SALPTMYHHS QQQLQMHNMP NHSLAEISQR AVGSMATEMQ RIENGAGRNS
201: TSLTRQSSSP AGLFSPLDVD AGYGKMMGLD GFGNGDLLPM GDAANRLKDQ MSFLPRQNSL MSKIPELGSE EVQNGGMMMK HVSGLRHQLS LPKTSSEMAA
301: VENFLQFQDA VPCRTRAKRG CATHPRSIAE RVRRTKISER IRKLQELVPN MDKQTNTADM LDLAVDYIHD LQKQVKALTE GRASCTCSRS KQQS
101: CENSLRATLL SAETENKGGT VGCQRSPQFR QPPPVLSSEM VSSQQRPAYS SALPTMYHHS QQQLQMHNMP NHSLAEISQR AVGSMATEMQ RIENGAGRNS
201: TSLTRQSSSP AGLFSPLDVD AGYGKMMGLD GFGNGDLLPM GDAANRLKDQ MSFLPRQNSL MSKIPELGSE EVQNGGMMMK HVSGLRHQLS LPKTSSEMAA
301: VENFLQFQDA VPCRTRAKRG CATHPRSIAE RVRRTKISER IRKLQELVPN MDKQTNTADM LDLAVDYIHD LQKQVKALTE GRASCTCSRS KQQS
001: MDSNNHLYDP NPTGSGLLRF RSAPSSVLAA FVDDDKIGFD SDRLLSRFVT SNGVNGDLGS PKFEDKSPVS LTNTSVSYAA TLPPPPQLEP SSFLGLPPHY
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G42280]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.