Factsheet for PGSC0003DMT400061284

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g100140.1.1	Tomato	nucleus	86.09	93.56
PGSC0003DMT400056716	Potato	nucleus	51.74	57.37
Zm00001d023444_P001	Maize	cytosol	5.32	55.32
VIT_06s0004g01740.t01	Wine grape	nucleus	32.31	53.2
KRH38466	Soybean	nucleus	8.18	47.62
Zm00001d051122_P001	Maize	nucleus	13.7	44.08
KRH24679	Soybean	nucleus	34.76	40.96
KRH23160	Soybean	nucleus	34.15	40.93
KRH29679	Soybean	nucleus	34.15	39.95
HORVU5Hr1G073170.5	Barley	cytosol, nucleus, plastid	14.93	39.89
GSMUA_Achr7P20490_001	Banana	nucleus	28.63	39.89
PGSC0003DMT400021062	Potato	nucleus	30.47	39.21
Zm00001d031441_P001	Maize	nucleus	30.06	38.68
HORVU7Hr1G050530.1	Barley	cytosol	21.27	38.66
TraesCS7A01G245800.1	Wheat	nucleus	30.27	38.64
TraesCS7B01G145800.1	Wheat	nucleus, plastid	30.47	38.5
TraesCS7D01G244300.1	Wheat	nucleus, plastid	30.27	38.34
Zm00001d006578_P001	Maize	nucleus	28.63	38.15
Os08t0506700-01	Rice	nucleus	30.27	37.09
GSMUA_Achr5P22310_001	Banana	nucleus	29.24	36.95
PGSC0003DMT400065029	Potato	nucleus	29.65	36.52
KRH10175	Soybean	nucleus	30.06	35.68
Bra018896.1-P	Field mustard	nucleus	25.77	34.9
AT1G51140.1	Thale cress	nucleus	26.99	34.83
Zm00001d021748_P001	Maize	plastid	26.58	34.76
CDY25213	Canola	nucleus	25.77	34.62
CDY22828	Canola	nucleus	25.36	34.35
Zm00001d006022_P001	Maize	nucleus, plastid	27.81	33.5
PGSC0003DMT400080418	Potato	mitochondrion, nucleus	17.79	33.46
TraesCS5B01G264300.1	Wheat	plastid	28.02	33.41
Zm00001d020932_P001	Maize	nucleus	27.81	33.33
Os09t0487900-01	Rice	nucleus	27.2	33.17
TraesCS5D01G272800.1	Wheat	plastid	28.02	33.01
TraesCS5A01G264800.1	Wheat	plastid	27.61	33.01
GSMUA_Achr9P27780_001	Banana	nucleus	27.2	32.05
PGSC0003DMT400016793	Potato	nucleus, plastid	22.7	31.9
OQU80938	Sorghum	nucleus	30.27	31.83
GSMUA_Achr3P11110_001	Banana	nucleus	25.15	31.22
KXG35904	Sorghum	nucleus, plastid	27.61	30.41
HORVU2Hr1G073240.1	Barley	cytosol	9.61	28.66
HORVU7Hr1G047180.1	Barley	plastid	13.91	27.09

Protein Annotations

EntrezGene:102602254	MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M1C7B4
PFAM:PF00010	EnsemblPlantsGene:PGSC0003DMG400023852	PGSC:PGSC0003DMG400023852	EnsemblPlants:PGSC0003DMT400061284	PFscan:PS50888	PANTHER:PTHR16223
PANTHER:PTHR16223:SF69	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000294B3F5	InterPro:bHLH_dom	SEG:seg

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023852]

Coordinates

chr12:+:60767976..60770593

Molecular Weight (calculated)

54221.2 Da

IEP (calculated)

4.922

GRAVY (calculated)

-0.853

Length

489 amino acids

Sequence
(BLAST)

001: MDDRSHQQQQ MTSGLTRYRS APSSYFTSLL SSNNPADVSG GSENCGYARD DFDQLLNPRV SNSGIKQVFD RFVANIGPQD SNPDGLIDDT QQIQQNPMSN
101: MDVRSEVVAP MKQEHEAQQQ QMNYQCQEQQ SQNSQFIAPV KQEITQQNSD YSLTSQMNYQ TQAQQNHNST DFTSGMDNFG RCNRLNQTKM DGGFGTGSSN
201: SNLTRYNSSP AGFFAQVNIE NEYGALRGIG NYGAGSGTNA AGEASFSNPS RFSSQTALPS GQPTSSGLLA PISEFGAKSI EESRRGDESF GKGHKSDESY
301: MAGFPMPSWD DSQILTDDFL QVPDDDEAGS FSNVNPSDNQ SSEGRARPPT LLSHLSLPQT SAELSAMEKL LQDSVPCKVR AKRGCATHPR SIAERVRRTR
401: ISERMRKLQE LVPNMDKQTN TADMLDFAAD YIKELETQVK VYPKTNHNEQ QKGIPSVQIS HFNTYNDYIF LNCFQALSET RSKCTCLHE

Best Arabidopsis Sequence Match ( AT2G42280.3 )
(BLAST)

001: MDSNNHLYDP NPTGSGLLRF RSAPSSVLAA FVDDDKIGFD SDRLLSRFVT SNGVNGDLGS PKFEDKSPVS LTNTSVSYAA TLPPPPQLEP SSFLGLPPHY
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK VKFLIIVEKK QRGLFSLLLN

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G42280]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.