Factsheet for VIT_06s0004g01740.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023444_P001	Maize	cytosol	10.1	63.83
KRH38466	Soybean	nucleus	16.84	59.52
Zm00001d051122_P001	Maize	nucleus	26.6	51.97
HORVU7Hr1G050530.1	Barley	cytosol	43.1	47.58
VIT_08s0007g07810.t01	Wine grape	nucleus	56.57	42.64
HORVU5Hr1G073170.5	Barley	cytosol, nucleus, plastid	25.93	42.08
KRH23160	Soybean	nucleus	57.58	41.91
VIT_13s0064g01290.t01	Wine grape	nucleus, plastid	53.54	41.51
KRH29679	Soybean	nucleus	55.89	39.71
KRH24679	Soybean	nucleus	54.88	39.28
GSMUA_Achr5P22310_001	Banana	nucleus	50.51	38.76
GSMUA_Achr7P20490_001	Banana	nucleus	45.45	38.46
Zm00001d006578_P001	Maize	nucleus	47.47	38.42
TraesCS7A01G245800.1	Wheat	nucleus	48.48	37.6
TraesCS7D01G244300.1	Wheat	nucleus, plastid	48.48	37.31
TraesCS7B01G145800.1	Wheat	nucleus, plastid	48.48	37.21
Os08t0506700-01	Rice	nucleus	49.49	36.84
Zm00001d031441_P001	Maize	nucleus	45.45	35.53
Solyc12g100140.1.1	Tomato	nucleus	52.19	34.44
Zm00001d020932_P001	Maize	nucleus	47.14	34.31
Zm00001d021748_P001	Maize	plastid	43.1	34.22
Bra018896.1-P	Field mustard	nucleus	41.08	33.8
CDY22828	Canola	nucleus	41.08	33.8
Zm00001d006022_P001	Maize	nucleus, plastid	46.13	33.74
KRH10175	Soybean	nucleus	46.46	33.5
AT1G51140.1	Thale cress	nucleus	42.42	33.25
CDY25213	Canola	nucleus	40.4	32.97
HORVU2Hr1G073240.1	Barley	cytosol	17.85	32.32
PGSC0003DMT400061284	Potato	nucleus	53.2	32.31
Os09t0487900-01	Rice	nucleus	43.43	32.17
VIT_05s0124g00240.t01	Wine grape	plastid	38.05	32.01
PGSC0003DMT400056716	Potato	nucleus	47.47	31.97
Solyc11g056650.1.1	Tomato	nucleus	47.47	31.97
VIT_18s0041g00690.t01	Wine grape	mitochondrion, nucleus	26.94	31.87
TraesCS5B01G264300.1	Wheat	plastid	43.77	31.71
OQU80938	Sorghum	nucleus	49.49	31.61
TraesCS5D01G272800.1	Wheat	plastid	44.11	31.57
TraesCS5A01G264800.1	Wheat	plastid	43.43	31.54
KXG35904	Sorghum	nucleus, plastid	46.13	30.86
GSMUA_Achr3P11110_001	Banana	nucleus	40.4	30.46
GSMUA_Achr9P27780_001	Banana	nucleus	42.42	30.36
HORVU7Hr1G047180.1	Barley	plastid	22.9	27.09

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:AM450106	ProteinID:CAN80884	ProteinID:CAN80884.1	ProteinID:CBI16416
ProteinID:CBI16416.3	UniProt:D7SL88	EMBL:FN594951	GO:GO:0000003	GO:GO:0001046	GO:GO:0001228
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006366
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009791
GO:GO:0009987	GO:GO:0010119	GO:GO:0042335	GO:GO:0045944	GO:GO:0046983	GO:GO:0048573
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223
PANTHER:PTHR16223:SF69	SMART:SM00353	SUPFAM:SSF47459	TIGR:TC70621	UniParc:UPI0001BE1199	ArrayExpress:VIT_06s0004g01740
EnsemblPlantsGene:VIT_06s0004g01740	EnsemblPlants:VIT_06s0004g01740.t01	unigene:Vvi.14484	InterPro:bHLH_dom	:	:

Description

No Description!

Coordinates

chr6:-:2129581..2131748

Molecular Weight (calculated)

31761.2 Da

IEP (calculated)

9.455

GRAVY (calculated)

-0.638

Length

297 amino acids

Sequence
(BLAST)

001: MPHHNSAAPG TVENSYSAVS SMGMDQSQQI KIGGGNNSNL IRHSSSPAGL FSHLNVENGY AIMRGMGNFG SGSGTNGEPS FSSASRLKGQ INFSSGPPSS
101: SGLVTPISEM GNKSMGTGSP DNGSFGEGHS NSGGFITGFP IGSWDDSAIM SESFSSLKSV RDDEAKTFSG LNASEAQKGE PANRPPVLAH HLSLPTKTSA
201: DLTTIEKYLQ FQDSVPCKIR AKRGCATHPR SIAERVRRTR ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQKQVK TLSDNRAKCT CSNKQKP

Best Arabidopsis Sequence Match ( AT2G42280.1 )
(BLAST)

001: MDSNNHLYDP NPTGSGLLRF RSAPSSVLAA FVDDDKIGFD SDRLLSRFVT SNGVNGDLGS PKFEDKSPVS LTNTSVSYAA TLPPPPQLEP SSFLGLPPHY
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G42280]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.