Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d023444_P001 | Maize | cytosol | 7.31 | 59.57 |
| VIT_06s0004g01740.t01 | Wine grape | nucleus | 41.51 | 53.54 |
| Zm00001d051122_P001 | Maize | nucleus | 19.84 | 50.0 |
| VIT_08s0007g07810.t01 | Wine grape | nucleus | 49.09 | 47.72 |
| HORVU7Hr1G050530.1 | Barley | cytosol | 30.03 | 42.75 |
| PGSC0003DMT400065029 | Potato | nucleus | 43.86 | 42.32 |
| GSMUA_Achr7P20490_001 | Banana | nucleus | 38.64 | 42.17 |
| HORVU5Hr1G073170.5 | Barley | cytosol, nucleus, plastid | 20.1 | 42.08 |
| GSMUA_Achr5P22310_001 | Banana | nucleus | 42.04 | 41.6 |
| Solyc01g086870.2.1 | Tomato | nucleus | 42.82 | 40.29 |
| TraesCS7A01G245800.1 | Wheat | nucleus | 39.95 | 39.95 |
| TraesCS7D01G244300.1 | Wheat | nucleus, plastid | 39.69 | 39.38 |
| TraesCS7B01G145800.1 | Wheat | nucleus, plastid | 39.69 | 39.28 |
| Zm00001d006578_P001 | Maize | nucleus | 37.34 | 38.96 |
| Os08t0506700-01 | Rice | nucleus | 39.95 | 38.35 |
| KRH27501 | Soybean | nucleus | 43.08 | 38.02 |
| KRH20846 | Soybean | nucleus | 43.34 | 37.9 |
| KRH43476 | Soybean | nucleus | 43.86 | 37.33 |
| Zm00001d031441_P001 | Maize | nucleus | 36.55 | 36.84 |
| Os09t0487900-01 | Rice | nucleus | 37.86 | 36.16 |
| KRH13908 | Soybean | extracellular, nucleus | 42.56 | 35.75 |
| Zm00001d006022_P001 | Maize | nucleus, plastid | 37.6 | 35.47 |
| Zm00001d021748_P001 | Maize | plastid | 34.46 | 35.29 |
| VIT_18s0041g00690.t01 | Wine grape | mitochondrion, nucleus | 22.98 | 35.06 |
| Zm00001d020932_P001 | Maize | nucleus | 37.34 | 35.05 |
| VIT_05s0124g00240.t01 | Wine grape | plastid | 32.11 | 34.84 |
| TraesCS5B01G264300.1 | Wheat | plastid | 36.81 | 34.39 |
| TraesCS5D01G272800.1 | Wheat | plastid | 37.08 | 34.22 |
| GSMUA_Achr3P11110_001 | Banana | nucleus | 34.99 | 34.01 |
| TraesCS5A01G264800.1 | Wheat | plastid | 36.29 | 33.99 |
| KXG35904 | Sorghum | nucleus, plastid | 37.08 | 31.98 |
| GSMUA_Achr9P27780_001 | Banana | nucleus | 34.46 | 31.81 |
| OQU80938 | Sorghum | nucleus | 37.86 | 31.18 |
| HORVU2Hr1G073240.1 | Barley | cytosol | 12.79 | 29.88 |
| HORVU7Hr1G047180.1 | Barley | plastid | 16.97 | 25.9 |
Protein Annotations
| EntrezGene:100855101 | wikigene:100855101 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ProteinID:CCB49486 | ProteinID:CCB49486.1 |
| UniProt:F6HBA7 | EMBL:FN595509 | GO:GO:0001046 | GO:GO:0001228 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006366 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | EntrezGene:LOC100855101 | wikigene:LOC100855101 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF69 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000210A3D1 | ArrayExpress:VIT_13s0064g01290 | EnsemblPlantsGene:VIT_13s0064g01290 |
| EnsemblPlants:VIT_13s0064g01290.t01 | RefSeq:XP_003633592 | RefSeq:XP_003633592.1 | InterPro:bHLH_dom | : | : |
Description
No Description!
Coordinates
chr13:+:23165450..23167427
Molecular Weight (calculated)
42411.9 Da
IEP (calculated)
8.300
GRAVY (calculated)
-0.643
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPDVYNHQH HPHQNSGLMR YQSAPSSLLG SFVDGSSVHL QSSSHETETM FARLMSGSSD SQGLQGVGAM KHEEEVMVEG VPQQNGYSNG SQMIYNSQPM
101: QTISVHNSAS PRTNMESSFM TSMAAENSMK IRNENCSSLV RQSSSPPGLF PNLTSENGFT PTREMGNLRA GNSTNVEANP SVSRLNNQIS FSSGLSSCNG
201: LLPKISEIRN ENIGLHSPKD GNNSNSRCYI SNFTTDSWSD SPFSGLTRMA ADNDLKMFSG LNSLEAQNVD SRYRSLGLTH HLSLPKNFPQ ITTIEKFLHF
301: QDSVPCKIRA KRGCATHPRS IAERVRRTRI SERMRKLQEL FPNMDKQTNT ADMLDLAVEY IKDLQKQVKT LNDTKVKCTC SSI
101: QTISVHNSAS PRTNMESSFM TSMAAENSMK IRNENCSSLV RQSSSPPGLF PNLTSENGFT PTREMGNLRA GNSTNVEANP SVSRLNNQIS FSSGLSSCNG
201: LLPKISEIRN ENIGLHSPKD GNNSNSRCYI SNFTTDSWSD SPFSGLTRMA ADNDLKMFSG LNSLEAQNVD SRYRSLGLTH HLSLPKNFPQ ITTIEKFLHF
301: QDSVPCKIRA KRGCATHPRS IAERVRRTRI SERMRKLQEL FPNMDKQTNT ADMLDLAVEY IKDLQKQVKT LNDTKVKCTC SSI
001: MDSNNHLYDP NPTGSGLLRF RSAPSSVLAA FVDDDKIGFD SDRLLSRFVT SNGVNGDLGS PKFEDKSPVS LTNTSVSYAA TLPPPPQLEP SSFLGLPPHY
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G42280]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.