Factsheet for Solyc01g086870.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065029	Potato	nucleus	92.14	94.46
Zm00001d023444_P001	Maize	cytosol	6.88	59.57
Zm00001d051122_P001	Maize	nucleus	19.16	51.32
VIT_13s0064g01290.t01	Wine grape	nucleus, plastid	40.29	42.82
HORVU5Hr1G073170.5	Barley	cytosol, nucleus, plastid	18.43	40.98
HORVU7Hr1G050530.1	Barley	cytosol	25.55	38.66
Solyc06g065040.2.1	Tomato	nucleus	23.34	37.4
Solyc10g079050.1.1	Tomato	nucleus	34.89	37.37
Os08t0506700-01	Rice	nucleus	36.61	37.34
GSMUA_Achr7P20490_001	Banana	nucleus	32.19	37.32
TraesCS7B01G145800.1	Wheat	nucleus, plastid	35.38	37.21
TraesCS7A01G245800.1	Wheat	nucleus	34.89	37.08
TraesCS7D01G244300.1	Wheat	nucleus, plastid	35.14	37.05
Zm00001d006578_P001	Maize	nucleus	33.17	36.78
GSMUA_Achr5P22310_001	Banana	nucleus	34.64	36.43
Zm00001d031441_P001	Maize	nucleus	33.91	36.32
KRH27501	Soybean	nucleus	38.57	36.18
KRH20846	Soybean	nucleus	38.08	35.39
Zm00001d021748_P001	Maize	plastid	30.96	33.69
Zm00001d006022_P001	Maize	nucleus, plastid	33.42	33.5
KRH43476	Soybean	nucleus	36.85	33.33
Zm00001d020932_P001	Maize	nucleus	33.42	33.33
GSMUA_Achr9P27780_001	Banana	nucleus	33.66	33.01
Os09t0487900-01	Rice	nucleus	32.43	32.92
TraesCS5B01G264300.1	Wheat	plastid	32.92	32.68
TraesCS5D01G272800.1	Wheat	plastid	33.17	32.53
KRH13908	Soybean	extracellular, nucleus	36.36	32.46
GSMUA_Achr3P11110_001	Banana	nucleus	31.2	32.23
TraesCS5A01G264800.1	Wheat	plastid	31.94	31.78
Solyc12g100140.1.1	Tomato	nucleus	35.14	31.78
Solyc09g098110.2.1	Tomato	nucleus, plastid	27.52	31.37
HORVU2Hr1G073240.1	Barley	cytosol	12.53	31.1
Solyc11g056650.1.1	Tomato	nucleus	33.66	31.07
KXG35904	Sorghum	nucleus, plastid	33.42	30.63
OQU80938	Sorghum	nucleus	34.89	30.54
HORVU7Hr1G047180.1	Barley	plastid	16.22	26.29

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0001046	GO:GO:0001228	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006366	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	UniProt:K4AY80	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223
PANTHER:PTHR16223:SF69	SMART:SM00353	SUPFAM:SSF47459	EnsemblPlantsGene:Solyc01g086870.2	EnsemblPlants:Solyc01g086870.2.1	UniParc:UPI0001D655A6
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:81797188..81799514

Molecular Weight (calculated)

45030.5 Da

IEP (calculated)

5.519

GRAVY (calculated)

-0.898

Length

407 amino acids

Sequence
(BLAST)

001: MFSSEPISRE MDKLNSFFFS GGGGGSSSFK NGEGMESEFF RSKEMMGSDF FQQQSQFQQS NSGGLTRYRS APSSFFAGIL DGDGNNSGEN FITGDGSSSS
101: DSDSMFTALL NNNDTTNNNG TRDMNDQNQK NQLQFGTSLK QEIGEEIEFG NENGVQNRYE NGGVSYSVGV QMQTRANLSN GNGDSDLIRQ NSSPAGFFNG
201: FMREVGNFGA SVGTNREAST STNGFNNHIS YSTNQSSTSN FMPSIAENES WNDASFNSLK RNRDGDLKMF STNFNGMTNQ NDESRNYTSS GLSHHLSLPK
301: TSSEMAAIEK YLQFQQDSVP CKIRAKRGCA THPRSIAERM RRTRISERMK KLQDLFPNMD KQTNTADMLD LAVDYIKDLQ KQVQTLTDKK AKCSCTSKQL
401: QYSNGTT

Best Arabidopsis Sequence Match ( AT2G42280.1 )
(BLAST)

001: MDSNNHLYDP NPTGSGLLRF RSAPSSVLAA FVDDDKIGFD SDRLLSRFVT SNGVNGDLGS PKFEDKSPVS LTNTSVSYAA TLPPPPQLEP SSFLGLPPHY
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G42280]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.