Factsheet for VIT_08s0007g07810.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g01740.t01	Wine grape	nucleus	42.64	56.57
KRH71888	Soybean	nucleus, plastid	53.55	55.82
KRH33007	Soybean	nucleus, plastid	53.05	54.43
Zm00001d023444_P001	Maize	cytosol	6.35	53.19
Solyc10g079050.1.1	Tomato	nucleus	49.49	51.32
PGSC0003DMT400021062	Potato	nucleus	49.49	51.32
Bra004678.1-P	Field mustard	nucleus, plastid	42.39	51.23
Zm00001d051122_P001	Maize	nucleus	19.54	50.66
CDX79884	Canola	nucleus, plastid	41.62	50.15
CDY53498	Canola	nucleus, plastid	41.12	49.85
CDY47961	Canola	nucleus	43.4	49.14
VIT_13s0064g01290.t01	Wine grape	nucleus, plastid	47.72	49.09
CDY14822	Canola	nucleus	42.89	48.99
Bra016886.1-P	Field mustard	nucleus	43.15	48.85
KRG95337	Soybean	nucleus	46.45	47.78
AT2G42280.3	Thale cress	nucleus	43.65	47.78
KRH67021	Soybean	nucleus	46.7	47.55
HORVU7Hr1G050530.1	Barley	cytosol	31.22	45.72
Zm00001d006578_P001	Maize	nucleus	40.61	43.6
GSMUA_Achr7P20490_001	Banana	nucleus	38.83	43.59
Os08t0506700-01	Rice	nucleus	43.91	43.36
HORVU5Hr1G073170.5	Barley	cytosol, nucleus, plastid	20.05	43.17
TraesCS7A01G245800.1	Wheat	nucleus	41.88	43.08
TraesCS7D01G244300.1	Wheat	nucleus, plastid	41.88	42.75
TraesCS7B01G145800.1	Wheat	nucleus, plastid	41.88	42.64
GSMUA_Achr5P22310_001	Banana	nucleus	41.62	42.38
Zm00001d020932_P001	Maize	nucleus	43.15	41.67
Zm00001d006022_P001	Maize	nucleus, plastid	42.64	41.38
Zm00001d031441_P001	Maize	nucleus	39.09	40.53
Os09t0487900-01	Rice	nucleus	40.1	39.4
Zm00001d021748_P001	Maize	plastid	37.31	39.3
GSMUA_Achr3P11110_001	Banana	nucleus	38.83	38.83
VIT_18s0041g00690.t01	Wine grape	mitochondrion, nucleus	24.37	38.25
VIT_05s0124g00240.t01	Wine grape	plastid	34.26	38.24
KXG35904	Sorghum	nucleus, plastid	42.13	37.39
GSMUA_Achr9P27780_001	Banana	nucleus	38.83	36.87
TraesCS5B01G264300.1	Wheat	plastid	37.31	35.85
TraesCS5A01G264800.1	Wheat	plastid	36.55	35.21
TraesCS5D01G272800.1	Wheat	plastid	37.06	35.18
OQU80938	Sorghum	nucleus	41.37	35.05
HORVU2Hr1G073240.1	Barley	cytosol	12.94	31.1
HORVU7Hr1G047180.1	Barley	plastid	18.78	29.48

Protein Annotations

EntrezGene:100267478	wikigene:100267478	MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A5AWW8	EMBL:AM438608
ProteinID:CAN62935	ProteinID:CAN62935.1	ProteinID:CCB55174	ProteinID:CCB55174.1	EMBL:FN595991	GO:GO:0001046
GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100267478	wikigene:LOC100267478
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF67	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI000151FB29	ArrayExpress:VIT_08s0007g07810	EnsemblPlantsGene:VIT_08s0007g07810	EnsemblPlants:VIT_08s0007g07810.t01	unigene:Vvi.12965	RefSeq:XP_002277274
RefSeq:XP_002277274.1	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:-:21244278..21247041

Molecular Weight (calculated)

43395.6 Da

IEP (calculated)

8.552

GRAVY (calculated)

-0.772

Length

394 amino acids

Sequence
(BLAST)

001: MSLMYSSNFK HSGEEETEKT RAVFMDSNTN YHHQQNQNQP PNSGLLRFRS APSSLLANFT DSGDGVHKGA NLCDDFESER FMPCGGFQDS AMSCQSQLPP
101: QYPRQSSSTS SSAMDGSYGV VNSNNMEAKQ GSSLVRQSSS PAGLFSHLSG QNGYAIMRGV GNFRPGNVGN GEISPSTSRL KPQVSFSSGL PSSLGLLPQI
201: SEIGSECIQA SSPNDRKLAN SNGDARFYSP GFPYGSWNDS AHFENFSGMK RDQDNDGKLY SGSNTSGIRN EEFGHRSQIL SHHLSLPKTS AEMAAMEKFL
301: QFQDSVPCKI RAKRGCATHP RSIAERVRRT RISERMRKLQ ELVPNMDKQT NTADMLDLAV EYIKDLQKQY NTLTDNRAHC KCLGKQKPVP NQTV

Best Arabidopsis Sequence Match ( AT2G42280.1 )
(BLAST)

001: MDSNNHLYDP NPTGSGLLRF RSAPSSVLAA FVDDDKIGFD SDRLLSRFVT SNGVNGDLGS PKFEDKSPVS LTNTSVSYAA TLPPPPQLEP SSFLGLPPHY
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G42280]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.