Factsheet for VIT_05s0124g00240.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70200	Canola	nucleus	19.26	67.33
KRG93108	Soybean	extracellular	51.27	63.29
Bra000291.1-P	Field mustard	nucleus	32.29	56.16
CDX83499	Canola	nucleus	32.29	56.16
PGSC0003DMT400016793	Potato	nucleus, plastid	54.96	55.75
Solyc09g098110.2.1	Tomato	nucleus, plastid	55.24	54.62
CDY42800	Canola	nucleus	30.88	53.69
AT1G05805.1	Thale cress	nucleus, plastid	51.56	50.28
Bra015456.1-P	Field mustard	nucleus, plastid	50.99	50.0
GSMUA_Achr1P27710_001	Banana	nucleus	47.31	49.85
CDY51319	Canola	nucleus, plastid	50.71	49.72
AT2G43140.2	Thale cress	nucleus	42.21	48.22
Bra004748.1-P	Field mustard	nucleus	41.64	48.04
CDY10149	Canola	nucleus, plastid	47.59	47.73
CDY17944	Canola	nucleus	41.64	47.27
KXG26599	Sorghum	nucleus	26.91	47.03
CDY30384	Canola	nucleus	39.66	45.6
GSMUA_Achr8P01370_001	Banana	nucleus	41.64	45.51
GSMUA_Achr6P21220_001	Banana	vacuole	34.56	43.73
Bra037732.1-P	Field mustard	nucleus	37.11	43.09
CDY66632	Canola	cytosol, nucleus, plastid	19.55	41.82
Zm00001d042482_P001	Maize	nucleus	41.93	40.88
Os01t0900800-01	Rice	nucleus	44.48	40.57
TraesCS6B01G244800.1	Wheat	nucleus	33.99	39.6
CDY10155	Canola	nucleus, plastid	31.44	39.36
TraesCS6D01G197500.1	Wheat	nucleus	34.28	39.29
TraesCS3D01G388700.1	Wheat	nucleus	40.51	39.07
Zm00001d017138_P001	Maize	nucleus	35.69	38.77
EES05388	Sorghum	nucleus	37.11	38.76
TraesCS6A01G214900.1	Wheat	nucleus	34.28	38.53
TraesCS3B01G426900.1	Wheat	nucleus	40.23	38.27
GSMUA_Achr8P32130_001	Banana	mitochondrion	45.61	38.15
VIT_06s0004g01740.t01	Wine grape	nucleus	32.01	38.05
TraesCS3A01G395000.1	Wheat	nucleus	39.94	38.01
HORVU3Hr1G089090.2	Barley	nucleus	39.94	37.3
HORVU6Hr1G054910.7	Barley	nucleus	33.14	36.11
VIT_08s0007g07810.t01	Wine grape	nucleus	38.24	34.26
KXG33923	Sorghum	plastid	41.93	33.95
VIT_18s0041g00690.t01	Wine grape	mitochondrion, nucleus	24.08	33.86
Os04t0489600-02	Rice	nucleus	35.13	33.6
VIT_13s0064g01290.t01	Wine grape	nucleus, plastid	34.84	32.11
Os02t0603600-01	Rice	nucleus	15.01	29.94

Protein Annotations

EntrezGene:100246361	wikigene:100246361	MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:CCB61587	ProteinID:CCB61587.1
ncoils:Coil	UniProt:F6I3R9	EMBL:FN596743	GO:GO:0001046	GO:GO:0001228	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0010119
GO:GO:0044212	GO:GO:0045944	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
EntrezGene:LOC100246361	wikigene:LOC100246361	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF51
SMART:SM00353	SUPFAM:SSF47459	TIGR:TC59890	UniParc:UPI00015CCB2D	ArrayExpress:VIT_05s0124g00240	EnsemblPlantsGene:VIT_05s0124g00240
EnsemblPlants:VIT_05s0124g00240.t01	unigene:Vvi.13943	RefSeq:XP_002268535	RefSeq:XP_002268535.2	RefSeq:XP_010650469.1	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:20721964..20730026

Molecular Weight (calculated)

37463.8 Da

IEP (calculated)

8.296

GRAVY (calculated)

-0.515

Length

353 amino acids

Sequence
(BLAST)

001: MYPSSASSSS HRSLHSSGLI RYGSAPGSLL TSAVDSLVST DREFSPLGSH HIMPHQYFSG DSSSESTCKV AAPPDHKEAG AGGPAAMLQR SYGFSEMPVA
101: GFSTASSLKG GGEGGGGGGS APSLIRHSSS PAGFLNQLTA DNLTRGTGNY SSQGGCNGGH GISRLKSQLS FKRQDSLSQI SEVSENMVDG ISSDNGHRNA
201: THSYATASFP MDAWDNTNTI VFSTTPNKRA KNINGDILNS LSSLEPQFSL PQTSLEMAAV EKLLQVPEDS VPCKVRAKRG CATHPRSIAE RERRTRISGK
301: LKKLQDLVPN MDKQTSYADM LDLAVQHIKG LQNEVQKLNK ELENCTCGCK QAL

Best Arabidopsis Sequence Match ( AT1G05805.1 )
(BLAST)

001: MYQSSSSTSS SSQRSSLPGG GGLIRYGSAP GSFLNSVVDE VIGGGSSNAR DFTGYQPSSD NFIGNFFTGA ADSSSLRSDS TTCGVNNSSD GQKQLGNNNN
101: NNSNKDIFLD RSYGGFNEIS QQHKSNDIGG GNSSGSYSLA RQRSSPADFF TYLASDKNNF SLNQPTSDYS PQGGSNGGRG HSRLKSQLSF TNHDSLARIN
201: EVNETPVHDG SGHSFSAASF GAATTDSWDD GSGSIGFTVT RPSKRSKDMD SGLFSQYSLP SDTSMNYMDN FMQLPEDSVP CKIRAKRGCA THPRSIAERE
301: RRTRISGKLK KLQDLVPNMD KQTSYSDMLD LAVQHIKGLQ HQLQNLKKDQ ENCTCGCSEK PS

Arabidopsis Description

BHLH128Transcription factor bHLH128 [Source:UniProtKB/Swiss-Prot;Acc:Q8H102]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.