Factsheet for TraesCS6D01G197500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G244800.1	Wheat	nucleus	95.13	96.7
TraesCS6A01G214900.1	Wheat	nucleus	95.45	93.63
HORVU6Hr1G054910.7	Barley	nucleus	90.26	85.8
Zm00001d017138_P001	Maize	nucleus	62.66	59.38
Os02t0603600-01	Rice	nucleus	33.77	58.76
EES05388	Sorghum	nucleus	63.31	57.69
CDY70200	Canola	nucleus	18.83	57.43
KRG93108	Soybean	extracellular	37.66	40.56
CDY42800	Canola	nucleus	26.3	39.9
GSMUA_Achr6P21220_001	Banana	vacuole	35.71	39.43
Bra000291.1-P	Field mustard	nucleus	25.65	38.92
CDX83499	Canola	nucleus	25.65	38.92
Bra015456.1-P	Field mustard	nucleus, plastid	40.91	35.0
CDY51319	Canola	nucleus, plastid	40.91	35.0
Bra004748.1-P	Field mustard	nucleus	34.42	34.64
AT2G43140.2	Thale cress	nucleus	34.42	34.3
VIT_05s0124g00240.t01	Wine grape	plastid	39.29	34.28
CDY10149	Canola	nucleus, plastid	38.96	34.09
CDY17944	Canola	nucleus	34.42	34.08
AT1G05805.1	Thale cress	nucleus, plastid	39.29	33.43
CDY30384	Canola	nucleus	33.12	33.22
TraesCS3D01G388700.1	Wheat	nucleus	39.29	33.06
Bra037732.1-P	Field mustard	nucleus	32.14	32.57
Solyc09g098110.2.1	Tomato	nucleus, plastid	37.66	32.49
PGSC0003DMT400016793	Potato	nucleus, plastid	36.04	31.9
CDY66632	Canola	cytosol, nucleus, plastid	15.26	28.48
TraesCS7D01G244300.1	Wheat	nucleus, plastid	34.42	27.46
TraesCS5D01G272800.1	Wheat	plastid	32.14	23.86
CDY10155	Canola	nucleus, plastid	20.78	22.7

Protein Annotations

EnsemblPlants:TraesCS6D01G197500.1	EnsemblPlantsGene:TraesCS6D01G197500	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR16223	PANTHER:PTHR16223:SF51	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chr6D:-:275158768..275163736

Molecular Weight (calculated)

32409.7 Da

IEP (calculated)

8.057

GRAVY (calculated)

-0.609

Length

308 amino acids

Sequence
(BLAST)

001: MRRFLPAGVG EPSSSSSSGP HGKHEGSEAA AAGGGLRYGG GDISLGRGND LLHGQFRGGE GEMKDDGADM LARHSSSPAG FFSNLMVDDG YHGSRGAGVA
101: GGSSGGEAHR HASSSTKMKS QLSFTAGGQQ TTAHLSRISE GASLFPSADA VRAAAHSGSE HPVSRSFSAS GSSGGFSIVG PWDESREIIG TLDLGGYESQ
201: FSGMASSSSL ELAGMDKYMQ AQQQQDQVAF KVRAKRGCAT HPRSIAERER RTRISYKLRK LQDLVPNMDK QTSTSDMLDL AVEHIKGLQS QLQAMKHEQD
301: KCTCCNKP

Best Arabidopsis Sequence Match ( AT1G05805.1 )
(BLAST)

001: MYQSSSSTSS SSQRSSLPGG GGLIRYGSAP GSFLNSVVDE VIGGGSSNAR DFTGYQPSSD NFIGNFFTGA ADSSSLRSDS TTCGVNNSSD GQKQLGNNNN
101: NNSNKDIFLD RSYGGFNEIS QQHKSNDIGG GNSSGSYSLA RQRSSPADFF TYLASDKNNF SLNQPTSDYS PQGGSNGGRG HSRLKSQLSF TNHDSLARIN
201: EVNETPVHDG SGHSFSAASF GAATTDSWDD GSGSIGFTVT RPSKRSKDMD SGLFSQYSLP SDTSMNYMDN FMQLPEDSVP CKIRAKRGCA THPRSIAERE
301: RRTRISGKLK KLQDLVPNMD KQTSYSDMLD LAVQHIKGLQ HQLQNLKKDQ ENCTCGCSEK PS

Arabidopsis Description

BHLH128Transcription factor bHLH128 [Source:UniProtKB/Swiss-Prot;Acc:Q8H102]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.