Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70200 | Canola | nucleus | 32.57 | 98.02 |
| Bra004748.1-P | Field mustard | nucleus | 74.01 | 73.53 |
| AT2G43140.2 | Thale cress | nucleus | 72.7 | 71.52 |
| Bra000291.1-P | Field mustard | nucleus | 47.37 | 70.94 |
| KRG93108 | Soybean | extracellular | 39.8 | 42.31 |
| VIT_05s0124g00240.t01 | Wine grape | plastid | 43.09 | 37.11 |
| Bra015456.1-P | Field mustard | nucleus, plastid | 42.11 | 35.56 |
| PGSC0003DMT400016793 | Potato | nucleus, plastid | 39.14 | 34.2 |
| Solyc09g098110.2.1 | Tomato | nucleus, plastid | 39.47 | 33.61 |
| KXG26599 | Sorghum | nucleus | 22.04 | 33.17 |
| GSMUA_Achr1P27710_001 | Banana | nucleus | 36.18 | 32.84 |
| TraesCS6B01G244800.1 | Wheat | nucleus | 32.57 | 32.67 |
| GSMUA_Achr6P21220_001 | Banana | vacuole | 29.61 | 32.26 |
| TraesCS6D01G197500.1 | Wheat | nucleus | 32.57 | 32.14 |
| TraesCS6A01G214900.1 | Wheat | nucleus | 32.57 | 31.53 |
| GSMUA_Achr8P01370_001 | Banana | nucleus | 32.89 | 30.96 |
| HORVU6Hr1G054910.7 | Barley | nucleus | 31.91 | 29.94 |
| Zm00001d017138_P001 | Maize | nucleus | 31.25 | 29.23 |
| Zm00001d042482_P001 | Maize | nucleus | 34.21 | 28.73 |
| EES05388 | Sorghum | nucleus | 31.91 | 28.7 |
| Bra036760.1-P | Field mustard | nucleus | 22.04 | 28.03 |
| TraesCS3D01G388700.1 | Wheat | nucleus | 32.89 | 27.32 |
| Bra034421.1-P | Field mustard | nucleus | 21.71 | 27.16 |
| Os01t0900800-01 | Rice | nucleus | 34.21 | 26.87 |
| TraesCS3B01G426900.1 | Wheat | nucleus | 32.57 | 26.68 |
| Os02t0603600-01 | Rice | nucleus | 15.46 | 26.55 |
| HORVU3Hr1G089090.2 | Barley | nucleus | 32.89 | 26.45 |
| TraesCS3A01G395000.1 | Wheat | nucleus | 31.91 | 26.15 |
| GSMUA_Achr8P32130_001 | Banana | mitochondrion | 34.87 | 25.12 |
| Os04t0489600-02 | Rice | nucleus | 30.26 | 24.93 |
| Bra028088.1-P | Field mustard | nucleus | 21.71 | 24.81 |
| Bra004678.1-P | Field mustard | nucleus, plastid | 25.99 | 24.23 |
| Bra016886.1-P | Field mustard | nucleus | 27.3 | 23.85 |
| KXG33923 | Sorghum | plastid | 32.89 | 22.94 |
| Bra018896.1-P | Field mustard | nucleus | 26.64 | 22.44 |
Protein Annotations
| EnsemblPlants:Bra037732.1 | EnsemblPlants:Bra037732.1-P | EnsemblPlantsGene:Bra037732 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR16223 | PANTHER:PTHR16223:SF51 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0002543C8C | UniProt:M4F9G9 | MapMan:15.5.32 | : | : |
Description
AT2G43140 (E=4e-096) | DNA binding / transcription factor
Coordinates
chrA04:-:17997473..18000626
Molecular Weight (calculated)
33106.2 Da
IEP (calculated)
7.847
GRAVY (calculated)
-0.769
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: MYRRSSSKST APDGGDAENN PYDETSGGFS SLGSQTHHNL PPPPRQQHNP NVVGFGHHLS GEPSTIGHSG ASSSSSSLFR HRSSPAGFYD QLLPTEPNGF
101: SLGQPNGGYG GGRGEERGLS RLKSEQRFSG GSSSNYQEHN SLPRISEVHA AAAAINSATS TSMSFGNDSN IWDRSSSQIS FTIDEPGKRS KTTDFFTLET
201: QFSMPQTSLE MARMESLMNI PEGSVPCRVR AKRGCATHPR SIAERDRRTR ISGKLKKLQE LVPNIDNQTS YAEMLDLAAE HIKGLQHQVE VRLSIHSIYD
301: IVSN
101: SLGQPNGGYG GGRGEERGLS RLKSEQRFSG GSSSNYQEHN SLPRISEVHA AAAAINSATS TSMSFGNDSN IWDRSSSQIS FTIDEPGKRS KTTDFFTLET
201: QFSMPQTSLE MARMESLMNI PEGSVPCRVR AKRGCATHPR SIAERDRRTR ISGKLKKLQE LVPNIDNQTS YAEMLDLAAE HIKGLQHQVE VRLSIHSIYD
301: IVSN
001: MYPPNSSKST AHDGGGDADT NQYDSAAGAT RDFSSLGPQT HHHPPPQRQQ QHQQNPNLVG HYLPGEPSSI GFDSNASSSS SLFRHRSSPA GFYDQHLPTD
101: PNGFSLGRPN GGYGGGGEQG PSRLKSELRF SSGSSSHQEH NSLPRISEVE AAAAARNGVA SSSMSFGNNR TNNWDNSSSH ISFTIDQPGK RSKNSDFFTL
201: ETQYSMPQTT LEMATMENLM NIPEDSVPCR ARAKRGFATH PRSIAERERR TRISGKLKKL QELVPNMDKQ TSYADMLDLA VEHIKGLQHQ VESLEKGMER
301: CTCGACKKR
101: PNGFSLGRPN GGYGGGGEQG PSRLKSELRF SSGSSSHQEH NSLPRISEVE AAAAARNGVA SSSMSFGNNR TNNWDNSSSH ISFTIDQPGK RSKNSDFFTL
201: ETQYSMPQTT LEMATMENLM NIPEDSVPCR ARAKRGFATH PRSIAERERR TRISGKLKKL QELVPNMDKQ TSYADMLDLA VEHIKGLQHQ VESLEKGMER
301: CTCGACKKR
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQ66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.