Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra018896.1-P | Field mustard | nucleus | 97.25 | 98.06 |
CDY22828 | Canola | nucleus | 97.25 | 98.06 |
AT1G51140.1 | Thale cress | nucleus | 85.16 | 81.79 |
Zm00001d023444_P001 | Maize | cytosol | 7.42 | 57.45 |
CDY70200 | Canola | nucleus | 13.46 | 48.51 |
Zm00001d051122_P001 | Maize | nucleus | 18.68 | 44.74 |
KRH38466 | Soybean | nucleus | 9.62 | 41.67 |
VIT_06s0004g01740.t01 | Wine grape | nucleus | 32.97 | 40.4 |
HORVU5Hr1G073170.5 | Barley | cytosol, nucleus, plastid | 19.51 | 38.8 |
CDX79884 | Canola | nucleus, plastid | 32.97 | 36.7 |
CDY53498 | Canola | nucleus, plastid | 31.87 | 35.69 |
CDY14822 | Canola | nucleus | 33.52 | 35.36 |
KRH23160 | Soybean | nucleus | 39.56 | 35.29 |
CDY47961 | Canola | nucleus | 33.52 | 35.06 |
KRH29679 | Soybean | nucleus | 40.11 | 34.93 |
KRH24679 | Soybean | nucleus | 39.01 | 34.22 |
CDX83499 | Canola | nucleus | 18.68 | 33.5 |
HORVU7Hr1G050530.1 | Barley | cytosol | 24.45 | 33.09 |
CDY42800 | Canola | nucleus | 18.41 | 33.0 |
CDY41870 | Canola | nucleus | 21.98 | 32.79 |
GSMUA_Achr7P20490_001 | Banana | nucleus | 31.32 | 32.48 |
GSMUA_Achr5P22310_001 | Banana | nucleus | 34.34 | 32.3 |
CDY69278 | Canola | nucleus | 21.15 | 31.82 |
CDX91761 | Canola | nucleus | 21.43 | 31.71 |
CDY28415 | Canola | nucleus | 21.15 | 31.69 |
Zm00001d006578_P001 | Maize | nucleus | 31.87 | 31.61 |
TraesCS7A01G245800.1 | Wheat | nucleus | 33.24 | 31.59 |
Zm00001d031441_P001 | Maize | nucleus | 32.97 | 31.58 |
TraesCS7D01G244300.1 | Wheat | nucleus, plastid | 33.24 | 31.35 |
TraesCS7B01G145800.1 | Wheat | nucleus, plastid | 33.24 | 31.27 |
CDY61281 | Canola | nucleus | 21.43 | 31.08 |
Os08t0506700-01 | Rice | nucleus | 33.24 | 30.33 |
Zm00001d020932_P001 | Maize | nucleus | 33.24 | 29.66 |
KRH10175 | Soybean | nucleus | 33.52 | 29.61 |
GSMUA_Achr3P11110_001 | Banana | nucleus | 31.87 | 29.44 |
Zm00001d006022_P001 | Maize | nucleus, plastid | 32.69 | 29.31 |
Os09t0487900-01 | Rice | nucleus | 31.87 | 28.93 |
TraesCS5D01G272800.1 | Wheat | plastid | 32.42 | 28.43 |
Solyc12g100140.1.1 | Tomato | nucleus | 34.89 | 28.22 |
Zm00001d021748_P001 | Maize | plastid | 28.85 | 28.07 |
CDY51319 | Canola | nucleus, plastid | 27.75 | 28.06 |
TraesCS5B01G264300.1 | Wheat | plastid | 31.59 | 28.05 |
CDY17944 | Canola | nucleus | 23.9 | 27.97 |
TraesCS5A01G264800.1 | Wheat | plastid | 31.04 | 27.63 |
CDY10149 | Canola | nucleus, plastid | 26.65 | 27.56 |
PGSC0003DMT400056716 | Potato | nucleus | 33.24 | 27.44 |
CDY30384 | Canola | nucleus | 22.8 | 27.04 |
Solyc11g056650.1.1 | Tomato | nucleus | 32.42 | 26.76 |
OQU80938 | Sorghum | nucleus | 33.79 | 26.45 |
KXG35904 | Sorghum | nucleus, plastid | 31.87 | 26.13 |
GSMUA_Achr9P27780_001 | Banana | nucleus | 29.67 | 26.02 |
PGSC0003DMT400061284 | Potato | nucleus | 34.62 | 25.77 |
HORVU2Hr1G073240.1 | Barley | cytosol | 11.26 | 25.0 |
CDY66632 | Canola | cytosol, nucleus, plastid | 10.99 | 24.24 |
HORVU7Hr1G047180.1 | Barley | plastid | 15.38 | 22.31 |
CDY10155 | Canola | nucleus, plastid | 13.46 | 17.38 |
Protein Annotations
MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078GKU6 | UniProt:A0A078GKU6 | EnsemblPlants:CDY25213 | ProteinID:CDY25213 |
ProteinID:CDY25213.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
EnsemblPlantsGene:GSBRNA2T00029173001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
PANTHER:PTHR16223 | PANTHER:PTHR16223:SF29 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EB9351 | InterPro:bHLH_dom |
SEG:seg | : | : | : | : | : |
Description
BnaC06g04380DBnaC06g04380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GKU6]
Coordinates
chrLK032170:-:438445..440524
Molecular Weight (calculated)
40308.4 Da
IEP (calculated)
7.103
GRAVY (calculated)
-0.684
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MESEFQQHHF LLHDHQHQRP PRTSGLVRYQ SAPSSYFSSF GESIEEFLDR PTSPETERIL SGFLQTTDTS NNVDSFLHHT FSETENKPPE VKTEEETVVD
101: DIPPTATAME VVEMAPPVST GYASVVRSLG QNKRPRDDRT PANNLARHNS SPAGLFSSID VETAYAAVMK NMGGFGVMNM SNSTEASSLT PRSKLPPPSM
201: GSIPEVDDVK PVFSSRLPPR TLSGGFNQGS ASSKRMAIAR TQSGGLDQYK TKDEDSSASR RPPLAHHMSL PKSLSDIEQL LSDSIPCKIR AKRGCATHPR
301: SIAERVRRTK ISERMRKLQD LVPNMDTQTN TADMLDLAVQ YIKDLQEQVK GLEESRARCR CSCA
101: DIPPTATAME VVEMAPPVST GYASVVRSLG QNKRPRDDRT PANNLARHNS SPAGLFSSID VETAYAAVMK NMGGFGVMNM SNSTEASSLT PRSKLPPPSM
201: GSIPEVDDVK PVFSSRLPPR TLSGGFNQGS ASSKRMAIAR TQSGGLDQYK TKDEDSSASR RPPLAHHMSL PKSLSDIEQL LSDSIPCKIR AKRGCATHPR
301: SIAERVRRTK ISERMRKLQD LVPNMDTQTN TADMLDLAVQ YIKDLQEQVK GLEESRARCR CSCA
001: MESEFQQHHF LLHDHQHQRP RNSGLIRYQS APSSYFSSFG ESIEEFLDRP TSPETERILS GFLQTTDTSD NVDSFLHHTF NSDGTEKKPP EVKTEDEDAE
101: IPVTATATAM EVVVSGDGEI SVNPEVSIGY VASVSRNKRP REKDDRTPVN NLARHNSSPA GLFSSIDVET AYAAVMKSMG GFGGSNVMST SNTEASSLTP
201: RSKLLPPTSR AMSPISEVDV KPGFSSRLPP RTLSGGFNRS FGNEGSASSK LTALARTQSG GLDQYKTKDE DSASRRPPLA HHMSLPKSLS DIEQLLSDSI
301: PCKIRAKRGC ATHPRSIAER VRRTKISERM RKLQDLVPNM DTQTNTADML DLAVQYIKDL QEQVKALEES RARCRCSSA
101: IPVTATATAM EVVVSGDGEI SVNPEVSIGY VASVSRNKRP REKDDRTPVN NLARHNSSPA GLFSSIDVET AYAAVMKSMG GFGGSNVMST SNTEASSLTP
201: RSKLLPPTSR AMSPISEVDV KPGFSSRLPP RTLSGGFNRS FGNEGSASSK LTALARTQSG GLDQYKTKDE DSASRRPPLA HHMSLPKSLS DIEQLLSDSI
301: PCKIRAKRGC ATHPRSIAER VRRTKISERM RKLQDLVPNM DTQTNTADML DLAVQYIKDL QEQVKALEES RARCRCSSA
Arabidopsis Description
BHLH122Transcription factor bHLH122 [Source:UniProtKB/Swiss-Prot;Acc:Q9C690]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.