Skip to main content
crop-pal logo
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra018896.1-P Field mustard nucleus 97.25 98.06
CDY22828 Canola nucleus 97.25 98.06
AT1G51140.1 Thale cress nucleus 85.16 81.79
Zm00001d023444_P001 Maize cytosol 7.42 57.45
CDY70200 Canola nucleus 13.46 48.51
Zm00001d051122_P001 Maize nucleus 18.68 44.74
KRH38466 Soybean nucleus 9.62 41.67
VIT_06s0004g01740.t01 Wine grape nucleus 32.97 40.4
HORVU5Hr1G073170.5 Barley cytosol, nucleus, plastid 19.51 38.8
CDX79884 Canola nucleus, plastid 32.97 36.7
CDY53498 Canola nucleus, plastid 31.87 35.69
CDY14822 Canola nucleus 33.52 35.36
KRH23160 Soybean nucleus 39.56 35.29
CDY47961 Canola nucleus 33.52 35.06
KRH29679 Soybean nucleus 40.11 34.93
KRH24679 Soybean nucleus 39.01 34.22
CDX83499 Canola nucleus 18.68 33.5
HORVU7Hr1G050530.1 Barley cytosol 24.45 33.09
CDY42800 Canola nucleus 18.41 33.0
CDY41870 Canola nucleus 21.98 32.79
GSMUA_Achr7P20490_001 Banana nucleus 31.32 32.48
GSMUA_Achr5P22310_001 Banana nucleus 34.34 32.3
CDY69278 Canola nucleus 21.15 31.82
CDX91761 Canola nucleus 21.43 31.71
CDY28415 Canola nucleus 21.15 31.69
Zm00001d006578_P001 Maize nucleus 31.87 31.61
TraesCS7A01G245800.1 Wheat nucleus 33.24 31.59
Zm00001d031441_P001 Maize nucleus 32.97 31.58
TraesCS7D01G244300.1 Wheat nucleus, plastid 33.24 31.35
TraesCS7B01G145800.1 Wheat nucleus, plastid 33.24 31.27
CDY61281 Canola nucleus 21.43 31.08
Os08t0506700-01 Rice nucleus 33.24 30.33
Zm00001d020932_P001 Maize nucleus 33.24 29.66
KRH10175 Soybean nucleus 33.52 29.61
GSMUA_Achr3P11110_001 Banana nucleus 31.87 29.44
Zm00001d006022_P001 Maize nucleus, plastid 32.69 29.31
Os09t0487900-01 Rice nucleus 31.87 28.93
TraesCS5D01G272800.1 Wheat plastid 32.42 28.43
Solyc12g100140.1.1 Tomato nucleus 34.89 28.22
Zm00001d021748_P001 Maize plastid 28.85 28.07
CDY51319 Canola nucleus, plastid 27.75 28.06
TraesCS5B01G264300.1 Wheat plastid 31.59 28.05
CDY17944 Canola nucleus 23.9 27.97
TraesCS5A01G264800.1 Wheat plastid 31.04 27.63
CDY10149 Canola nucleus, plastid 26.65 27.56
PGSC0003DMT400056716 Potato nucleus 33.24 27.44
CDY30384 Canola nucleus 22.8 27.04
Solyc11g056650.1.1 Tomato nucleus 32.42 26.76
OQU80938 Sorghum nucleus 33.79 26.45
KXG35904 Sorghum nucleus, plastid 31.87 26.13
GSMUA_Achr9P27780_001 Banana nucleus 29.67 26.02
PGSC0003DMT400061284 Potato nucleus 34.62 25.77
HORVU2Hr1G073240.1 Barley cytosol 11.26 25.0
CDY66632 Canola cytosol, nucleus, plastid 10.99 24.24
HORVU7Hr1G047180.1 Barley plastid 15.38 22.31
CDY10155 Canola nucleus, plastid 13.46 17.38
Protein Annotations
MapMan:15.5.32Gene3D:4.10.280.10GO:A0A078GKU6UniProt:A0A078GKU6EnsemblPlants:CDY25213ProteinID:CDY25213
ProteinID:CDY25213.1ncoils:CoilGO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0046983
EnsemblPlantsGene:GSBRNA2T00029173001InterPro:HLH_DNA-bd_sfInterPro:IPR011598InterPro:IPR036638PFAM:PF00010PFscan:PS50888
PANTHER:PTHR16223PANTHER:PTHR16223:SF29SMART:SM00353SUPFAM:SSF47459UniParc:UPI0004EB9351InterPro:bHLH_dom
SEG:seg:::::
Description
BnaC06g04380DBnaC06g04380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GKU6]
Coordinates
chrLK032170:-:438445..440524
Molecular Weight (calculated)
40308.4 Da
IEP (calculated)
7.103
GRAVY (calculated)
-0.684
Length
364 amino acids
Sequence
(BLAST)
001: MESEFQQHHF LLHDHQHQRP PRTSGLVRYQ SAPSSYFSSF GESIEEFLDR PTSPETERIL SGFLQTTDTS NNVDSFLHHT FSETENKPPE VKTEEETVVD
101: DIPPTATAME VVEMAPPVST GYASVVRSLG QNKRPRDDRT PANNLARHNS SPAGLFSSID VETAYAAVMK NMGGFGVMNM SNSTEASSLT PRSKLPPPSM
201: GSIPEVDDVK PVFSSRLPPR TLSGGFNQGS ASSKRMAIAR TQSGGLDQYK TKDEDSSASR RPPLAHHMSL PKSLSDIEQL LSDSIPCKIR AKRGCATHPR
301: SIAERVRRTK ISERMRKLQD LVPNMDTQTN TADMLDLAVQ YIKDLQEQVK GLEESRARCR CSCA
Best Arabidopsis Sequence Match ( AT1G51140.1 )
(BLAST)
001: MESEFQQHHF LLHDHQHQRP RNSGLIRYQS APSSYFSSFG ESIEEFLDRP TSPETERILS GFLQTTDTSD NVDSFLHHTF NSDGTEKKPP EVKTEDEDAE
101: IPVTATATAM EVVVSGDGEI SVNPEVSIGY VASVSRNKRP REKDDRTPVN NLARHNSSPA GLFSSIDVET AYAAVMKSMG GFGGSNVMST SNTEASSLTP
201: RSKLLPPTSR AMSPISEVDV KPGFSSRLPP RTLSGGFNRS FGNEGSASSK LTALARTQSG GLDQYKTKDE DSASRRPPLA HHMSLPKSLS DIEQLLSDSI
301: PCKIRAKRGC ATHPRSIAER VRRTKISERM RKLQDLVPNM DTQTNTADML DLAVQYIKDL QEQVKALEES RARCRCSSA
Arabidopsis Description
BHLH122Transcription factor bHLH122 [Source:UniProtKB/Swiss-Prot;Acc:Q9C690]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.