Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G347000.1 | Wheat | nucleus | 92.8 | 93.49 |
| TraesCS5D01G353400.1 | Wheat | nucleus | 94.28 | 91.33 |
| TraesCS1B01G154700.2 | Wheat | nucleus | 58.76 | 73.47 |
| KXG39981 | Sorghum | nucleus | 47.97 | 62.28 |
| Zm00001d028020_P001 | Maize | nucleus | 47.69 | 61.33 |
| Zm00001d048205_P003 | Maize | nucleus | 32.47 | 58.96 |
| Zm00001d048207_P001 | Maize | nucleus | 29.8 | 55.88 |
| TraesCS3B01G201500.1 | Wheat | nucleus | 31.64 | 48.45 |
| VIT_07s0005g02190.t01 | Wine grape | nucleus | 32.29 | 42.79 |
| KRH68317 | Soybean | nucleus | 31.37 | 40.87 |
| KRG96582 | Soybean | nucleus | 30.72 | 39.98 |
| AT2G47090.1 | Thale cress | nucleus | 27.68 | 39.16 |
| CDY37785 | Canola | nucleus | 22.6 | 39.14 |
| CDX80080 | Canola | nucleus | 23.99 | 38.92 |
| Bra003493.1-P | Field mustard | nucleus | 28.87 | 38.88 |
| Bra004478.1-P | Field mustard | nucleus | 23.99 | 38.86 |
| AT3G62240.1 | Thale cress | nucleus | 28.6 | 38.18 |
| Solyc01g068390.2.1 | Tomato | nucleus | 30.81 | 38.0 |
| PGSC0003DMT400046261 | Potato | nucleus | 30.72 | 37.84 |
| TraesCS2B01G181500.1 | Wheat | cytosol | 4.15 | 19.07 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G347900.1 | EnsemblPlantsGene:TraesCS5B01G347900 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR001841 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_type | InterPro:Znf_RING | PANTHER:PTHR22938 | PANTHER:PTHR22938:SF7 | PFscan:PS50089 |
| ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | TIGR:cd16615 | MapMan:15.5.15 | : |
Description
No Description!
Coordinates
chr5B:+:528780704..528784099
Molecular Weight (calculated)
117747.0 Da
IEP (calculated)
7.644
GRAVY (calculated)
-0.661
Length
1084 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDDSCAVCAD ALEWVAYGPC GHREVCSTCV VRLRFVVGDR HCCICKTDCP SVFVTKAMGD YTRVISDFSA LPAAASEGKA GEHWYHEDSR AYFDDADHYK
0101: MIRAMCRLSC SVCERIEEDQ AGQAAQAQAK GRDSTFKTIG LLRGHLADKH GLRMCNLCLG GRKVFICQQK LYTQEQMTRH TQTGDTEVDG SDEVERGGFA
0201: GHPICEYCKR AFYGDNELYE HMTRQHYTCH ICQRRHPGSY DYFRNYDDLE MHFRKDHFLC EDEACLAKKF VVFQSDAEIN RHNAMEHGGR MTRAQRNAAL
0301: QIPTSFMYQR NEHDQRRGRG RGRNDHHDRP DRDFSLPVDG SATADHGLGS RLDSAGGSAM FADESLFPPL PGSSNKCPAS TQQGLQGLPK TTLASRLQQS
0401: RKGTVKVLYS GRPQTAQNPE MVPHVSTSTH TCPTPERERN GSATAEHGLG SRVDSVAGPL QSSSVSSASS RRSLGNGRVL KQLSFPHLQG WDIPDARMDA
0501: VSDETSCAPL SEQQSSNTLA LNQSSRGSER LGDVFLPLPG SSNKGSASTQ QGLQAFAKNT LASRLEQPRK GTMKVLKSGR PQTAENPEIV PHVSTSTQTC
0601: PTPERERDGS ATAEHHGLGS LVDSVAGPLQ SSSVNSASSG QSLGNGGVLE QLSFPPLGDQ DIPDARMDAV PEKTSFPPLS EHQSKHALAV NQSLRGSAKH
0701: QAKHAPAVNQ SSRDSARLGD ESLFPPLPGL SNKGSASTQQ GLQSLAENTF ASMLQQPRKG AMEVLNSCRS QTAENLEIVP EFSTSTEAWP TPDQGLHLSG
0801: SSHLRIEPQS TRDNGLMPPA SSGSAWNSRA PNKMKHSVST PYLVSGGSSA QASSSRAYGN KNQVPPQSSQ PLPVAEDVRQ ANNALVERMR AAFGMDEDRF
0901: SAFKEIACEY RHGVIGTSEY LSYVEQFGIS HLVPEMAILL PDPVKQAELA EAYYANMRSK SLKENGGCET ITLKEKLLQE GEAAVLSKDG YRSSKERNPL
1001: SAGGDPVAIS KASSTSRYVG KGGGSSSSSN NSKQSKKTSK FLRARLGDNS LAMLDFRHPD DVSPEGNVWK NGAAHKLFSG NAKK
0101: MIRAMCRLSC SVCERIEEDQ AGQAAQAQAK GRDSTFKTIG LLRGHLADKH GLRMCNLCLG GRKVFICQQK LYTQEQMTRH TQTGDTEVDG SDEVERGGFA
0201: GHPICEYCKR AFYGDNELYE HMTRQHYTCH ICQRRHPGSY DYFRNYDDLE MHFRKDHFLC EDEACLAKKF VVFQSDAEIN RHNAMEHGGR MTRAQRNAAL
0301: QIPTSFMYQR NEHDQRRGRG RGRNDHHDRP DRDFSLPVDG SATADHGLGS RLDSAGGSAM FADESLFPPL PGSSNKCPAS TQQGLQGLPK TTLASRLQQS
0401: RKGTVKVLYS GRPQTAQNPE MVPHVSTSTH TCPTPERERN GSATAEHGLG SRVDSVAGPL QSSSVSSASS RRSLGNGRVL KQLSFPHLQG WDIPDARMDA
0501: VSDETSCAPL SEQQSSNTLA LNQSSRGSER LGDVFLPLPG SSNKGSASTQ QGLQAFAKNT LASRLEQPRK GTMKVLKSGR PQTAENPEIV PHVSTSTQTC
0601: PTPERERDGS ATAEHHGLGS LVDSVAGPLQ SSSVNSASSG QSLGNGGVLE QLSFPPLGDQ DIPDARMDAV PEKTSFPPLS EHQSKHALAV NQSLRGSAKH
0701: QAKHAPAVNQ SSRDSARLGD ESLFPPLPGL SNKGSASTQQ GLQSLAENTF ASMLQQPRKG AMEVLNSCRS QTAENLEIVP EFSTSTEAWP TPDQGLHLSG
0801: SSHLRIEPQS TRDNGLMPPA SSGSAWNSRA PNKMKHSVST PYLVSGGSSA QASSSRAYGN KNQVPPQSSQ PLPVAEDVRQ ANNALVERMR AAFGMDEDRF
0901: SAFKEIACEY RHGVIGTSEY LSYVEQFGIS HLVPEMAILL PDPVKQAELA EAYYANMRSK SLKENGGCET ITLKEKLLQE GEAAVLSKDG YRSSKERNPL
1001: SAGGDPVAIS KASSTSRYVG KGGGSSSSSN NSKQSKKTSK FLRARLGDNS LAMLDFRHPD DVSPEGNVWK NGAAHKLFSG NAKK
001: MDDSCAVCAE NLEWVGYGSC GHREVCSTCV VRLRFILNDR RCCICKTECP VVFVTKALGD YTKTISDFST TFPSVPKEGR VGSFWYHEET NVYFDDLNHY
101: TRIKAMCRLS CNLCNDTNKT RPKKEPNHCV RFKSVEHLKD HLNHQHKLHM CSLCLVGRKV FICEQKLFTK GQLNQHISSG DSEVDGSESE RGGFTGHPMC
201: EFCKRPFYGD NELYTHMSRE HYTCHICQRL KPGQYEYYGN YDDLEVHFRS DHFLCEDETC LAKKFIVFQI EAELKRHNAI DHGGRMSRSQ QNASLQIQAS
301: FQYPNSRRGR RRSSLREPNL VLLESQASYA FNDDNNLPQH VGRSGNSRLG ESSFPPLSVQ ANQGQSRFGQ NSESLVSNTT TTRQRHRANQ GQSRFGQNSE
401: SLVSNTTTTR QRHQTNRSAT SGSSQAWPAL NRGPAEISIT SRVQSSGASA QSQSRHHDRV ESTRTLASAV PQDARTTVGG CSSGSSLSSA NATKRNNHHS
501: SSTPKMSETR SLAQPSHSDS PQISAVKNRR SSSTSANAGN IQVAQGVSDV QSDNKSLVEK IHASLGHDEE LFMAFKNTSG KYRHGSIDAR TYLEYVKGYG
601: LSHLVLDMAR LCPDPQRQKE LIDTHNACLK GGNKGKAVKV ESSSDSKGDR FVDTVRKLQF SDKSQDKDKD KDAYRSDKGK TKVTTLVNSS SAGVGLGDTG
701: KQPKKTSKFL RTRLGEKSMA AVLDLRNSNP EPEPEPKNDN SKRSQNSPGG LPLRGAWKRG SAKLFV
101: TRIKAMCRLS CNLCNDTNKT RPKKEPNHCV RFKSVEHLKD HLNHQHKLHM CSLCLVGRKV FICEQKLFTK GQLNQHISSG DSEVDGSESE RGGFTGHPMC
201: EFCKRPFYGD NELYTHMSRE HYTCHICQRL KPGQYEYYGN YDDLEVHFRS DHFLCEDETC LAKKFIVFQI EAELKRHNAI DHGGRMSRSQ QNASLQIQAS
301: FQYPNSRRGR RRSSLREPNL VLLESQASYA FNDDNNLPQH VGRSGNSRLG ESSFPPLSVQ ANQGQSRFGQ NSESLVSNTT TTRQRHRANQ GQSRFGQNSE
401: SLVSNTTTTR QRHQTNRSAT SGSSQAWPAL NRGPAEISIT SRVQSSGASA QSQSRHHDRV ESTRTLASAV PQDARTTVGG CSSGSSLSSA NATKRNNHHS
501: SSTPKMSETR SLAQPSHSDS PQISAVKNRR SSSTSANAGN IQVAQGVSDV QSDNKSLVEK IHASLGHDEE LFMAFKNTSG KYRHGSIDAR TYLEYVKGYG
601: LSHLVLDMAR LCPDPQRQKE LIDTHNACLK GGNKGKAVKV ESSSDSKGDR FVDTVRKLQF SDKSQDKDKD KDAYRSDKGK TKVTTLVNSS SAGVGLGDTG
701: KQPKKTSKFL RTRLGEKSMA AVLDLRNSNP EPEPEPKNDN SKRSQNSPGG LPLRGAWKRG SAKLFV
Arabidopsis Description
Zinc ion binding/nucleic acid binding protein [Source:UniProtKB/TrEMBL;Acc:F4IK69]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.