Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d048205_P003 | Maize | nucleus | 52.43 | 74.04 |
| Zm00001d048207_P001 | Maize | nucleus | 49.7 | 72.49 |
| Os05t0279400-01 | Rice | plasma membrane | 72.48 | 71.63 |
| TraesCS1B01G154700.2 | Wheat | nucleus | 71.53 | 69.55 |
| TraesCS1A01G139500.1 | Wheat | nucleus | 70.58 | 69.51 |
| HORVU1Hr1G032900.1 | Barley | endoplasmic reticulum, mitochondrion, nucleus | 70.46 | 66.22 |
| TraesCS3B01G201500.1 | Wheat | nucleus | 42.7 | 50.85 |
| TraesCS3D01G176900.1 | Wheat | nucleus | 42.7 | 50.7 |
| VIT_07s0005g02190.t01 | Wine grape | nucleus | 47.69 | 49.14 |
| TraesCS5B01G347900.1 | Wheat | nucleus | 61.33 | 47.69 |
| TraesCS5A01G347000.1 | Wheat | nucleus | 60.74 | 47.58 |
| KRH68317 | Soybean | nucleus | 45.91 | 46.51 |
| TraesCS5D01G353400.1 | Wheat | nucleus | 61.09 | 46.02 |
| TraesCS3A01G164600.4 | Wheat | nucleus | 42.7 | 45.86 |
| KRG96582 | Soybean | nucleus | 45.31 | 45.86 |
| Os01t0251200-01 | Rice | extracellular | 39.03 | 44.64 |
| HORVU3Hr1G034270.3 | Barley | nucleus, plastid | 40.57 | 44.3 |
| Bra003493.1-P | Field mustard | nucleus | 42.11 | 44.1 |
| PGSC0003DMT400046261 | Potato | nucleus | 45.31 | 43.41 |
| Solyc01g068390.2.1 | Tomato | nucleus | 44.96 | 43.12 |
| AT3G62240.1 | Thale cress | nucleus | 41.16 | 42.73 |
| AT2G47090.1 | Thale cress | nucleus | 37.72 | 41.51 |
| CDY37785 | Canola | nucleus | 30.72 | 41.37 |
| Bra004478.1-P | Field mustard | nucleus | 32.5 | 40.96 |
| CDX80080 | Canola | nucleus | 32.38 | 40.87 |
Protein Annotations
| MapMan:15.5.15 | UniProt:A0A1D6JRB3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR001841 | InterPro:IPR013087 | ProteinID:ONL94487.1 | PFscan:PS50089 | PANTHER:PTHR22938 | PANTHER:PTHR22938:SF6 |
| SMART:SM00355 | UniParc:UPI0002209067 | EnsemblPlantsGene:Zm00001d028020 | EnsemblPlants:Zm00001d028020_P001 | EnsemblPlants:Zm00001d028020_T001 | InterPro:Znf_C2H2_type |
| InterPro:Znf_RING | SEG:seg | : | : | : | : |
Description
RING/U-box superfamily protein
Coordinates
chr1:+:20533271..20539407
Molecular Weight (calculated)
92849.5 Da
IEP (calculated)
8.398
GRAVY (calculated)
-0.686
Length
843 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDFCVVCAD TLEWVAYGPC GHRDVCSTCV ARLRFVMDDK KCCICKTVCP FVFVTKAMGE YTRVVADFSV FPIGVNEGKA GDFWYHEDTQ AYFDDVDHYR
101: MIRAMCRLSC SVCDNAEDQV ALAAQAKRRS KFRSIDQLKG HLFHVHRLHM CNLCLEGRKV FICEQKLYSR SQLAQHIKTG DSEVDGSEVE RNGFAGHPLC
201: EFCKSSFYGD NEIYMHMSRE HYSCHICQRQ HPEQYDYFRN YDDLELHFRK DHFLCEDEAC LAKKFVVFLS EAELKRHNAM EHGGRMSRSQ RNAALQIPTS
301: FIYRRNEQAQ RRGRGRGRNA LHDRFDSHIS SSAQNGQATA DRRLDSVSGS FQSLSIGSSS GGAEVGQGSR TGQVLEQLSF PPLLDPDIPD NNVDSFHDET
401: SFPSLSEQQS RYALALSQSA RGTARLGDES LFPPLPGSSG SNNNRGAGSV QQGLQSLAKS TLAARLQQRS KGPVKVLNTA RPRPPENVEA LSSSTQTWPT
501: PDQGLVLSGY SQLRSGTQPT RENAMPTISS NTVWNPVAPN KMKHSVSTPN LVSGGSSAQV SLSTAYGSNK SQDPPQGNQT LPVPEDFRAA NKTLVERMRS
601: ALGMDEDRYS AFKEIAGEYR QGIIGTLEYL SYVEQFGLSH LVPEMARLLP DPQKQRELAD AYYTNTRFKS LQENGGGTSS QEGNRKKKGK GKAPVTESSA
701: ANDVNSALAD NILETVRRLQ SNQQAREGGA EVLSKDGYRP SKGVQPAAGS SSNLDSDTSS NTKSSGAKDN IGKGGGNKQP KKTAKFLRAR LGDNSLATLD
801: LSRPSASPER PERELQGPET GLPARGAWKN GGGQKLFSSN GRK
101: MIRAMCRLSC SVCDNAEDQV ALAAQAKRRS KFRSIDQLKG HLFHVHRLHM CNLCLEGRKV FICEQKLYSR SQLAQHIKTG DSEVDGSEVE RNGFAGHPLC
201: EFCKSSFYGD NEIYMHMSRE HYSCHICQRQ HPEQYDYFRN YDDLELHFRK DHFLCEDEAC LAKKFVVFLS EAELKRHNAM EHGGRMSRSQ RNAALQIPTS
301: FIYRRNEQAQ RRGRGRGRNA LHDRFDSHIS SSAQNGQATA DRRLDSVSGS FQSLSIGSSS GGAEVGQGSR TGQVLEQLSF PPLLDPDIPD NNVDSFHDET
401: SFPSLSEQQS RYALALSQSA RGTARLGDES LFPPLPGSSG SNNNRGAGSV QQGLQSLAKS TLAARLQQRS KGPVKVLNTA RPRPPENVEA LSSSTQTWPT
501: PDQGLVLSGY SQLRSGTQPT RENAMPTISS NTVWNPVAPN KMKHSVSTPN LVSGGSSAQV SLSTAYGSNK SQDPPQGNQT LPVPEDFRAA NKTLVERMRS
601: ALGMDEDRYS AFKEIAGEYR QGIIGTLEYL SYVEQFGLSH LVPEMARLLP DPQKQRELAD AYYTNTRFKS LQENGGGTSS QEGNRKKKGK GKAPVTESSA
701: ANDVNSALAD NILETVRRLQ SNQQAREGGA EVLSKDGYRP SKGVQPAAGS SSNLDSDTSS NTKSSGAKDN IGKGGGNKQP KKTAKFLRAR LGDNSLATLD
801: LSRPSASPER PERELQGPET GLPARGAWKN GGGQKLFSSN GRK
001: MDDSCAVCAD NLEWVAYGSC GHREVCSTCV VRLRFVLDDP RCCICKTESP IVFVTKALGD YTRTINDFST FPSAPREGRV GAFWYHEDTQ AFFDDLDQYR
101: MIKAMCRLSC GVCDKTEDKP REGGPRHHRQ RIKSVEQLKG HLYHKHKLHM CGLCLEGRKI FICEQKLYTR AQLNQHIQTG DSEVDGSESE RGGFAGHPMC
201: EFCRNPFYGD NELYTHMSTE HYTCHLCQRS QPGQYEYYKN YDDLEIHFRR DHFLCEDDSC LAKKFTVFQN ESELKRHNAI EHGGKMSRSQ RSAALQIPTS
301: FRYSRGNDQE NRRGRPRSFR REPGDEEYNL AVHAALRLSE SEYSRQEPAP PPSSAPPGFS ENNNIHVDDT DPLIQPMESL STTDMEPSSR YLQAVGSFGG
401: GGSRLGESAF PPLSGQQSSG QNVESLPTNT MAARLRRQTN RTSTASAIAS PSQGWPVINR GPGQASITSG GNHSSSGWPA IGRTPVQASS SSVQSRSHNR
501: VSQPRPLASA VPQAARNANR IPHSSSAPNL SDTRSLQPSH SDFPPVSSAV VQNRKTSSTT TQGSSNTQPP PDVQSANKSL IEKMRSALGH DEDVFVAFRN
601: ISGQYRQGSI DAKTYLEYVQ GYGLSHLVID LARLCPDPKR QKELIDTHNA SLREEDSKDN GRSAAQSSSQ PKESQSSKKN KGKAVKVVDP KETLADNFMD
701: TVRRLQSSQN PQEEEEEAIS KDKNTYRSDK GKSQVVGTDS SSTGSKQQRK KTSKFHRVRL GDGSMAALLD LNNSTRESEQ ESKDSNSNSN QNQTGGLPVR
801: GVWRKGGANL FS
101: MIKAMCRLSC GVCDKTEDKP REGGPRHHRQ RIKSVEQLKG HLYHKHKLHM CGLCLEGRKI FICEQKLYTR AQLNQHIQTG DSEVDGSESE RGGFAGHPMC
201: EFCRNPFYGD NELYTHMSTE HYTCHLCQRS QPGQYEYYKN YDDLEIHFRR DHFLCEDDSC LAKKFTVFQN ESELKRHNAI EHGGKMSRSQ RSAALQIPTS
301: FRYSRGNDQE NRRGRPRSFR REPGDEEYNL AVHAALRLSE SEYSRQEPAP PPSSAPPGFS ENNNIHVDDT DPLIQPMESL STTDMEPSSR YLQAVGSFGG
401: GGSRLGESAF PPLSGQQSSG QNVESLPTNT MAARLRRQTN RTSTASAIAS PSQGWPVINR GPGQASITSG GNHSSSGWPA IGRTPVQASS SSVQSRSHNR
501: VSQPRPLASA VPQAARNANR IPHSSSAPNL SDTRSLQPSH SDFPPVSSAV VQNRKTSSTT TQGSSNTQPP PDVQSANKSL IEKMRSALGH DEDVFVAFRN
601: ISGQYRQGSI DAKTYLEYVQ GYGLSHLVID LARLCPDPKR QKELIDTHNA SLREEDSKDN GRSAAQSSSQ PKESQSSKKN KGKAVKVVDP KETLADNFMD
701: TVRRLQSSQN PQEEEEEAIS KDKNTYRSDK GKSQVVGTDS SSTGSKQQRK KTSKFHRVRL GDGSMAALLD LNNSTRESEQ ESKDSNSNSN QNQTGGLPVR
801: GVWRKGGANL FS
Arabidopsis Description
At3g62240 [Source:UniProtKB/TrEMBL;Acc:Q9M1Q0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.