Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G176900.1 | Wheat | nucleus | 97.6 | 97.32 |
| TraesCS3A01G164600.4 | Wheat | nucleus | 97.03 | 87.52 |
| HORVU3Hr1G034270.3 | Barley | nucleus, plastid | 83.9 | 76.94 |
| Os01t0251200-01 | Rice | extracellular | 52.4 | 50.34 |
| Zm00001d048205_P003 | Maize | nucleus | 41.38 | 49.08 |
| Zm00001d048207_P001 | Maize | nucleus | 37.85 | 46.37 |
| KXG39981 | Sorghum | nucleus | 51.55 | 43.71 |
| TraesCS1B01G154700.2 | Wheat | nucleus | 53.11 | 43.37 |
| Zm00001d028020_P001 | Maize | nucleus | 50.85 | 42.7 |
| CDY37785 | Canola | nucleus | 35.03 | 39.62 |
| VIT_07s0005g02190.t01 | Wine grape | nucleus | 43.08 | 37.29 |
| Bra004478.1-P | Field mustard | nucleus | 35.17 | 37.22 |
| CDX80080 | Canola | nucleus | 35.03 | 37.13 |
| AT2G47090.1 | Thale cress | nucleus | 39.27 | 36.29 |
| KRH68317 | Soybean | nucleus | 42.37 | 36.06 |
| KRG96582 | Soybean | nucleus | 41.81 | 35.53 |
| Solyc01g068390.2.1 | Tomato | nucleus | 43.64 | 35.15 |
| PGSC0003DMT400046261 | Potato | nucleus | 43.5 | 35.0 |
| Bra003493.1-P | Field mustard | nucleus | 39.69 | 34.91 |
| AT3G62240.1 | Thale cress | nucleus | 39.83 | 34.73 |
| TraesCS5B01G347900.1 | Wheat | nucleus | 48.45 | 31.64 |
| TraesCS2B01G181500.1 | Wheat | cytosol | 6.07 | 18.22 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G201500.1 | EnsemblPlantsGene:TraesCS3B01G201500 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR001841 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_type | InterPro:Znf_RING | PANTHER:PTHR22938 | PANTHER:PTHR22938:SF7 | PFscan:PS50089 |
| ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | TIGR:cd16615 | MapMan:15.5.15 | : |
Description
No Description!
Coordinates
chr3B:+:235861086..235865903
Molecular Weight (calculated)
78119.0 Da
IEP (calculated)
8.672
GRAVY (calculated)
-0.664
Length
708 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDACAVCAE PLEWVAYGAC GHREVCSACV TRLRFVLRDQ RCCLCMTHCP AVFATKEMGD RTKAIGDLSA LPAAAGEGKT GEYWYHEATQ VWFDDADHYR
101: MVRAMCRISC TVCESSGNKG KKGSKSSKAK HKIKFDSIEQ LKAHLSNKHC LYMCDLCLDG RKVFICEQKL YTRPQLNQHI KTGDSEVDGS EVERRGFAGH
201: PMCKFCKSPF YGETELDTHM TREHYSCHIC QRQHGGQDDY FRNYDDLEMH FRRDHFFCED RECLEKKFIV FQSEAELKRH NAVEHRKRMP HAQKNSALQT
301: PTSSRDRSEL EQSNGRGRRH NACLSNGSVD NTLLSVQNSI ANMGRGSGNQ VAAVVSPLRS SSGHSSQAGQ SSGMNRVWQQ PQPLSRQEVP DARIGSCFQE
401: ASSPPISGQS GYTPVVSRSS RTAARAMDLE FPPLSGSNNR TAASTEQGVR KVAENTHAFG LRQQSNGIVN THHSAQHWSL QNTDLIPSGS SHSPSWPTPN
501: TSPHVSGSLS LTSAGNGRQE TPVSRQVLCS VDDVRAANNS LVERMQAALG MDRDRYSMFK EISGEYRQGV INASKYLSYV EQFGLSHLVL EMSRLLPDPQ
601: KQKELADAYY ANLRLTSLQG NGGGGAVCSK DCTRKNKGKG KLPAAAQDSL EGKLLSAASK LQSQVGGSRA LLREGCGAAD GPLQEPRWPV KGAWQNRGGQ
701: RLVSKAKK
101: MVRAMCRISC TVCESSGNKG KKGSKSSKAK HKIKFDSIEQ LKAHLSNKHC LYMCDLCLDG RKVFICEQKL YTRPQLNQHI KTGDSEVDGS EVERRGFAGH
201: PMCKFCKSPF YGETELDTHM TREHYSCHIC QRQHGGQDDY FRNYDDLEMH FRRDHFFCED RECLEKKFIV FQSEAELKRH NAVEHRKRMP HAQKNSALQT
301: PTSSRDRSEL EQSNGRGRRH NACLSNGSVD NTLLSVQNSI ANMGRGSGNQ VAAVVSPLRS SSGHSSQAGQ SSGMNRVWQQ PQPLSRQEVP DARIGSCFQE
401: ASSPPISGQS GYTPVVSRSS RTAARAMDLE FPPLSGSNNR TAASTEQGVR KVAENTHAFG LRQQSNGIVN THHSAQHWSL QNTDLIPSGS SHSPSWPTPN
501: TSPHVSGSLS LTSAGNGRQE TPVSRQVLCS VDDVRAANNS LVERMQAALG MDRDRYSMFK EISGEYRQGV INASKYLSYV EQFGLSHLVL EMSRLLPDPQ
601: KQKELADAYY ANLRLTSLQG NGGGGAVCSK DCTRKNKGKG KLPAAAQDSL EGKLLSAASK LQSQVGGSRA LLREGCGAAD GPLQEPRWPV KGAWQNRGGQ
701: RLVSKAKK
001: MDDSCAVCAD NLEWVAYGSC GHREVCSTCV VRLRFVLDDP RCCICKTESP IVFVTKALGD YTRTINDFST FPSAPREGRV GAFWYHEDTQ AFFDDLDQYR
101: MIKAMCRLSC GVCDKTEDKP REGGPRHHRQ RIKSVEQLKG HLYHKHKLHM CGLCLEGRKI FICEQKLYTR AQLNQHIQTG DSEVDGSESE RGGFAGHPMC
201: EFCRNPFYGD NELYTHMSTE HYTCHLCQRS QPGQYEYYKN YDDLEIHFRR DHFLCEDDSC LAKKFTVFQN ESELKRHNAI EHGGKMSRSQ RSAALQIPTS
301: FRYSRGNDQE NRRGRPRSFR REPGDEEYNL AVHAALRLSE SEYSRQEPAP PPSSAPPGFS ENNNIHVDDT DPLIQPMESL STTDMEPSSR YLQAVGSFGG
401: GGSRLGESAF PPLSGQQSSG QNVESLPTNT MAARLRRQTN RTSTASAIAS PSQGWPVINR GPGQASITSG GNHSSSGWPA IGRTPVQASS SSVQSRSHNR
501: VSQPRPLASA VPQAARNANR IPHSSSAPNL SDTRSLQPSH SDFPPVSSAV VQNRKTSSTT TQGSSNTQPP PDVQSANKSL IEKMRSALGH DEDVFVAFRN
601: ISGQYRQGSI DAKTYLEYVQ GYGLSHLVID LARLCPDPKR QKELIDTHNA SLREEDSKDN GRSAAQSSSQ PKESQSSKKN KGKAVKVVDP KETLADNFMD
701: TVRRLQSSQN PQEEEEEAIS KDKNTYRSDK GKSQVVGTDS SSTGSKQQRK KTSKFHRVRL GDGSMAALLD LNNSTRESEQ ESKDSNSNSN QNQTGGLPVR
801: GVWRKGGANL FS
101: MIKAMCRLSC GVCDKTEDKP REGGPRHHRQ RIKSVEQLKG HLYHKHKLHM CGLCLEGRKI FICEQKLYTR AQLNQHIQTG DSEVDGSESE RGGFAGHPMC
201: EFCRNPFYGD NELYTHMSTE HYTCHLCQRS QPGQYEYYKN YDDLEIHFRR DHFLCEDDSC LAKKFTVFQN ESELKRHNAI EHGGKMSRSQ RSAALQIPTS
301: FRYSRGNDQE NRRGRPRSFR REPGDEEYNL AVHAALRLSE SEYSRQEPAP PPSSAPPGFS ENNNIHVDDT DPLIQPMESL STTDMEPSSR YLQAVGSFGG
401: GGSRLGESAF PPLSGQQSSG QNVESLPTNT MAARLRRQTN RTSTASAIAS PSQGWPVINR GPGQASITSG GNHSSSGWPA IGRTPVQASS SSVQSRSHNR
501: VSQPRPLASA VPQAARNANR IPHSSSAPNL SDTRSLQPSH SDFPPVSSAV VQNRKTSSTT TQGSSNTQPP PDVQSANKSL IEKMRSALGH DEDVFVAFRN
601: ISGQYRQGSI DAKTYLEYVQ GYGLSHLVID LARLCPDPKR QKELIDTHNA SLREEDSKDN GRSAAQSSSQ PKESQSSKKN KGKAVKVVDP KETLADNFMD
701: TVRRLQSSQN PQEEEEEAIS KDKNTYRSDK GKSQVVGTDS SSTGSKQQRK KTSKFHRVRL GDGSMAALLD LNNSTRESEQ ESKDSNSNSN QNQTGGLPVR
801: GVWRKGGANL FS
Arabidopsis Description
At3g62240 [Source:UniProtKB/TrEMBL;Acc:Q9M1Q0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.