Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37785 | Canola | nucleus | 50.78 | 62.14 |
| Bra004478.1-P | Field mustard | nucleus | 53.79 | 61.58 |
| CDX80080 | Canola | nucleus | 53.39 | 61.23 |
| GSMUA_Achr8P10850_001 | Banana | cytosol | 13.45 | 60.59 |
| AT3G62240.1 | Thale cress | nucleus | 51.7 | 48.77 |
| KRH68317 | Soybean | nucleus | 47.91 | 44.11 |
| KRG96582 | Soybean | nucleus | 47.65 | 43.82 |
| VIT_07s0005g02190.t01 | Wine grape | nucleus | 46.21 | 43.28 |
| Solyc01g068390.2.1 | Tomato | nucleus | 48.43 | 42.21 |
| PGSC0003DMT400046261 | Potato | nucleus | 48.43 | 42.16 |
| Zm00001d048205_P003 | Maize | nucleus | 31.85 | 40.87 |
| Os05t0279400-01 | Rice | plasma membrane | 45.43 | 40.8 |
| GSMUA_Achr5P20970_001 | Banana | nucleus | 36.95 | 39.8 |
| TraesCS1A01G139500.1 | Wheat | nucleus | 44.39 | 39.72 |
| KXG39981 | Sorghum | nucleus | 43.21 | 39.64 |
| TraesCS1B01G154700.2 | Wheat | nucleus | 44.52 | 39.33 |
| TraesCS3B01G201500.1 | Wheat | nucleus | 36.29 | 39.27 |
| TraesCS3D01G176900.1 | Wheat | nucleus | 36.29 | 39.15 |
| HORVU1Hr1G032900.1 | Barley | endoplasmic reticulum, mitochondrion, nucleus | 44.78 | 38.24 |
| Zm00001d048207_P001 | Maize | nucleus | 28.72 | 38.06 |
| Zm00001d028020_P001 | Maize | nucleus | 41.51 | 37.72 |
| HORVU3Hr1G034270.3 | Barley | nucleus, plastid | 35.77 | 35.49 |
| TraesCS3A01G164600.4 | Wheat | nucleus | 35.77 | 34.9 |
| Os01t0251200-01 | Rice | extracellular | 30.55 | 31.75 |
| TraesCS5A01G347000.1 | Wheat | nucleus | 39.56 | 28.16 |
| TraesCS5B01G347900.1 | Wheat | nucleus | 39.16 | 27.68 |
| TraesCS5D01G353400.1 | Wheat | nucleus | 39.16 | 26.81 |
| OQU89392 | Sorghum | cytosol, plasma membrane, vacuole | 5.61 | 20.38 |
| TraesCS2D01G161800.1 | Wheat | cytosol | 5.48 | 18.03 |
| TraesCS2A01G156000.1 | Wheat | cytosol | 5.48 | 18.03 |
| TraesCS2B01G181500.1 | Wheat | cytosol | 5.48 | 17.8 |
| OQU89393 | Sorghum | plasma membrane | 5.09 | 16.53 |
Protein Annotations
| MapMan:15.5.15 | EntrezGene:819322 | ProteinID:AEC10799.1 | ArrayExpress:AT2G47090 | EnsemblPlantsGene:AT2G47090 | RefSeq:AT2G47090 |
| TAIR:AT2G47090 | RefSeq:AT2G47090-TAIR-G | EnsemblPlants:AT2G47090.1 | TAIR:AT2G47090.1 | Unigene:At.26314 | UniProt:F4IK69 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR001841 | InterPro:IPR013087 | RefSeq:NP_566094.2 |
| PO:PO:0000293 | ScanProsite:PS00028 | PFscan:PS50089 | PANTHER:PTHR22938 | PANTHER:PTHR22938:SF6 | SMART:SM00355 |
| UniParc:UPI00005DC2DD | InterPro:Znf_C2H2_type | InterPro:Znf_RING | SEG:seg | : | : |
Description
Zinc ion binding/nucleic acid binding protein [Source:UniProtKB/TrEMBL;Acc:F4IK69]
Coordinates
chr2:-:19341225..19344343
Molecular Weight (calculated)
85369.5 Da
IEP (calculated)
9.329
GRAVY (calculated)
-0.831
Length
766 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDSCAVCAE NLEWVGYGSC GHREVCSTCV VRLRFILNDR RCCICKTECP VVFVTKALGD YTKTISDFST TFPSVPKEGR VGSFWYHEET NVYFDDLNHY
101: TRIKAMCRLS CNLCNDTNKT RPKKEPNHCV RFKSVEHLKD HLNHQHKLHM CSLCLVGRKV FICEQKLFTK GQLNQHISSG DSEVDGSESE RGGFTGHPMC
201: EFCKRPFYGD NELYTHMSRE HYTCHICQRL KPGQYEYYGN YDDLEVHFRS DHFLCEDETC LAKKFIVFQI EAELKRHNAI DHGGRMSRSQ QNASLQIQAS
301: FQYPNSRRGR RRSSLREPNL VLLESQASYA FNDDNNLPQH VGRSGNSRLG ESSFPPLSVQ ANQGQSRFGQ NSESLVSNTT TTRQRHRANQ GQSRFGQNSE
401: SLVSNTTTTR QRHQTNRSAT SGSSQAWPAL NRGPAEISIT SRVQSSGASA QSQSRHHDRV ESTRTLASAV PQDARTTVGG CSSGSSLSSA NATKRNNHHS
501: SSTPKMSETR SLAQPSHSDS PQISAVKNRR SSSTSANAGN IQVAQGVSDV QSDNKSLVEK IHASLGHDEE LFMAFKNTSG KYRHGSIDAR TYLEYVKGYG
601: LSHLVLDMAR LCPDPQRQKE LIDTHNACLK GGNKGKAVKV ESSSDSKGDR FVDTVRKLQF SDKSQDKDKD KDAYRSDKGK TKVTTLVNSS SAGVGLGDTG
701: KQPKKTSKFL RTRLGEKSMA AVLDLRNSNP EPEPEPKNDN SKRSQNSPGG LPLRGAWKRG SAKLFV
101: TRIKAMCRLS CNLCNDTNKT RPKKEPNHCV RFKSVEHLKD HLNHQHKLHM CSLCLVGRKV FICEQKLFTK GQLNQHISSG DSEVDGSESE RGGFTGHPMC
201: EFCKRPFYGD NELYTHMSRE HYTCHICQRL KPGQYEYYGN YDDLEVHFRS DHFLCEDETC LAKKFIVFQI EAELKRHNAI DHGGRMSRSQ QNASLQIQAS
301: FQYPNSRRGR RRSSLREPNL VLLESQASYA FNDDNNLPQH VGRSGNSRLG ESSFPPLSVQ ANQGQSRFGQ NSESLVSNTT TTRQRHRANQ GQSRFGQNSE
401: SLVSNTTTTR QRHQTNRSAT SGSSQAWPAL NRGPAEISIT SRVQSSGASA QSQSRHHDRV ESTRTLASAV PQDARTTVGG CSSGSSLSSA NATKRNNHHS
501: SSTPKMSETR SLAQPSHSDS PQISAVKNRR SSSTSANAGN IQVAQGVSDV QSDNKSLVEK IHASLGHDEE LFMAFKNTSG KYRHGSIDAR TYLEYVKGYG
601: LSHLVLDMAR LCPDPQRQKE LIDTHNACLK GGNKGKAVKV ESSSDSKGDR FVDTVRKLQF SDKSQDKDKD KDAYRSDKGK TKVTTLVNSS SAGVGLGDTG
701: KQPKKTSKFL RTRLGEKSMA AVLDLRNSNP EPEPEPKNDN SKRSQNSPGG LPLRGAWKRG SAKLFV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.