CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004478.1-P	Field mustard	nucleus	94.09	88.04
CDX80080	Canola	nucleus	93.93	88.02
GSMUA_Achr8P10850_001	Banana	cytosol	15.81	58.24
AT2G47090.1	Thale cress	nucleus	62.14	50.78
Zm00001d048205_P003	Maize	nucleus	37.54	39.36
Zm00001d048207_P001	Maize	nucleus	33.39	36.16
GSMUA_Achr5P20970_001	Banana	nucleus	40.26	35.44
TraesCS3B01G201500.1	Wheat	nucleus	39.62	35.03
TraesCS3D01G176900.1	Wheat	nucleus	39.46	34.79
VIT_07s0005g02190.t01	Wine grape	nucleus	45.05	34.47
KRH68317	Soybean	nucleus	45.53	34.25
KRG96582	Soybean	nucleus	45.05	33.85
CDX67884	Canola	nucleus	37.86	33.81
Os05t0279400-01	Rice	plasma membrane	45.21	33.18
Solyc01g068390.2.1	Tomato	nucleus	46.01	32.76
PGSC0003DMT400046261	Potato	nucleus	45.85	32.61
KXG39981	Sorghum	nucleus	42.97	32.22
HORVU3Hr1G034270.3	Barley	nucleus, plastid	39.62	32.12
TraesCS1A01G139500.1	Wheat	nucleus	43.45	31.78
TraesCS1B01G154700.2	Wheat	nucleus	43.61	31.49
TraesCS3A01G164600.4	Wheat	nucleus	39.14	31.21
Zm00001d028020_P001	Maize	nucleus	41.37	30.72
HORVU1Hr1G032900.1	Barley	endoplasmic reticulum, mitochondrion, nucleus	43.45	30.32
Os01t0251200-01	Rice	extracellular	35.3	29.99
TraesCS5B01G347900.1	Wheat	nucleus	39.14	22.6
TraesCS5A01G347000.1	Wheat	nucleus	38.82	22.58
TraesCS5D01G353400.1	Wheat	nucleus	38.82	21.72
OQU89392	Sorghum	cytosol, plasma membrane, vacuole	6.71	19.91
TraesCS2A01G156000.1	Wheat	cytosol	6.87	18.45
TraesCS2D01G161800.1	Wheat	cytosol	6.87	18.45
TraesCS2B01G181500.1	Wheat	cytosol	6.87	18.22
OQU89393	Sorghum	plasma membrane	6.23	16.53

Protein Annotations

EnsemblPlants:CDY37785	EnsemblPlantsGene:GSBRNA2T00064720001	GO:A0A078HHF2	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR001841	InterPro:IPR013087	InterPro:Znf_C2H2_type	InterPro:Znf_RING	PANTHER:PTHR22938	PANTHER:PTHR22938:SF6
PFscan:PS50089	ProteinID:CDY37785	ProteinID:CDY37785.1	ScanProsite:PS00028	SEG:seg	SMART:SM00355
UniParc:UPI0004EE6C82	UniProt:A0A078HHF2	MapMan:15.5.15	:	:	:

Description

BnaC04g00400DBnaC04g00400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HHF2]

Coordinates

chrLK032408:-:166444..169105

Molecular Weight (calculated)

69983.7 Da

IEP (calculated)

8.481

GRAVY (calculated)

-0.711

Length

626 amino acids

Sequence
(BLAST)

001: MDDCCAVCAE NLEWVAYGFC GHREVCSTCV VRLRFILGDR RCCICKTECP IVFVTKEFGD YTKTITDFST FPSDPKEGRV GSFWYHEETK LFFDDFNQYT
101: KIKSMCRLSC TSCVSNHHLR FKSVEHLKNH LNQQHKLHMC SLCLVGRKVF ICEQKLFTKE QLNQHISSGD SEVDGSESER GGFTGHPMCE FCKRPFYGGN
201: ELYTHMSREH YTCHICQRLR PGQYEYYGNY DDLEAHFRSD HFLCEDESCL AKKFIVFQIE AELKRHNTVD HGGRMSRTQQ SASLQASAFQ VQSRRGRRRS
301: SQASYAIDDS YPLLQPMRSS GGSRLAESSF PPLSVQANRG VQTRFVQNSE SNNQRHEANR SAAARSSQAW PALIRGPTQA SVPSSVQSSS ASAQSQSRTL
401: ASSQASVGGC SSGSSLNPCN AKRNHYTTST AKMSDTRSLE QPSHPGSPPA SAVKSVNKSL VDKIRSSLGH DEELFKAFKD TSGKYRHGSI DARTYLEYVK
501: GYGLSHLVLD MARLCPDPKR QKELIDTHNA CLKSSSQAKE SCGLKKNKGE AVKVESSSDS MGFKLQFSDK SQDEDKKSMA ANLRSSSNTT EPEAESKNDE
601: SKSSQSSTDG LQLRGAWRRG SAKLFS

Best Arabidopsis Sequence Match ( AT2G47090.4 )
(BLAST)

001: MDDSCAVCAE NLEWVGYGSC GHREVCSTCV VRLRFILNDR RCCICKTECP VVFVTKALGD YTKTISDFST TFPSVPKEGR VGSFWYHEET NVYFDDLNHY
101: TRIKAMCRLS CNLCNDTNKT RPKKEPNHCV RFKSVEHLKD HLNHQHKLHM CSLCLVGRKV FICEQKLFTK GQLNQHISSG DSEVDGSESE RGGFTGHPMC
201: EFCKRPFYGD NELYTHMSRE HYTCHICQRL KPGQYEYYGN YDDLEVHFRS DHFLCEDETC LAKKFIVFQI EAELKRHNAI DHGGRMSRSQ QNASLQIQAS
301: FQYPNSRRGR RRSSLREPNL VLLESQASYA FNDDNNLPQH VGRSGNSRLG ESSFPPLSVQ ANQGQSRFGQ NSESLVSNTT TTRQRHQTNR SATSGSSQAW
401: PALNRGPAEI SITSRVQSSG ASAQSQSRHH DRVESTRTLA SAVPQDARTT VGGCSSGSSL SSANATKRNN HHSSSTPKMS ETRSLAQPSH SDSPQISAVK
501: NRRSSSTSAN AGNIQVAQGV SDVQSDNKSL VEKIHASLGH DEELFMAFKN TSGKYRHGSI DARTYLEYVK GYGLSHLVLD MARLCPDPQR QKELIDTHNA
601: CLKGGNKGKA VKVESSSDSK GDRFVDTVRK LQFSDKSQDK DKDKDAYRSD KGKTKVTTLV NSSSAGVGLG DTGKQPKKTS KFLRTRLGEK SMAAVLDLRN
701: SNPEPEPEPK NDNSKRSQNS PGGLPLRGAW KRGSAKLFV

Arabidopsis Description

Zinc ion binding/nucleic acid binding protein [Source:UniProtKB/TrEMBL;Acc:F4IK69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.