Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G347000.1 | Wheat | nucleus | 91.15 | 94.8 |
| TraesCS5B01G347900.1 | Wheat | nucleus | 91.33 | 94.28 |
| KXG39981 | Sorghum | nucleus | 46.2 | 61.92 |
| Zm00001d028020_P001 | Maize | nucleus | 46.02 | 61.09 |
| Zm00001d048205_P003 | Maize | nucleus | 31.55 | 59.13 |
| Zm00001d048207_P001 | Maize | nucleus | 28.95 | 56.06 |
| TraesCS3D01G176900.1 | Wheat | nucleus | 30.65 | 48.31 |
| VIT_07s0005g02190.t01 | Wine grape | nucleus | 31.46 | 43.03 |
| KRH68317 | Soybean | nucleus | 30.83 | 41.47 |
| KRG96582 | Soybean | nucleus | 30.03 | 40.34 |
| AT2G47090.1 | Thale cress | nucleus | 26.81 | 39.16 |
| Bra003493.1-P | Field mustard | nucleus | 28.15 | 39.13 |
| CDY37785 | Canola | nucleus | 21.72 | 38.82 |
| Bra004478.1-P | Field mustard | nucleus | 23.06 | 38.56 |
| CDX80080 | Canola | nucleus | 22.97 | 38.47 |
| AT3G62240.1 | Thale cress | nucleus | 27.88 | 38.42 |
| Solyc01g068390.2.1 | Tomato | nucleus | 30.03 | 38.23 |
| PGSC0003DMT400046261 | Potato | nucleus | 29.94 | 38.07 |
| TraesCS2D01G161800.1 | Wheat | cytosol | 4.2 | 20.17 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G353400.1 | EnsemblPlantsGene:TraesCS5D01G353400 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR001841 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_type | InterPro:Znf_RING | PANTHER:PTHR22938 | PANTHER:PTHR22938:SF7 | PFscan:PS50089 |
| ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | TIGR:cd16615 | MapMan:15.5.15 | : |
Description
No Description!
Coordinates
chr5D:+:435512600..435515959
Molecular Weight (calculated)
121206.0 Da
IEP (calculated)
8.285
GRAVY (calculated)
-0.655
Length
1119 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDDSCAVCAD ALEWVAYGPC GHREVCSTCV VRLRFVVGDR HCCICKTDCP SVFVTKAMGD YTRVISDFSA LPAAAGEGKV GEYWYHEDSR AYFDDADHYK
0101: MIRAMCRLSC SVCERIEADQ AGQAAAAQAK RGDSTFETIG LLRGHLSEKH GLRMCNLCLE GRKVFICQQK LYTQEQMARH TQTGDTEVDG SEVERGGFAG
0201: HPICEYCKRA FYGDNELYAH MTRDHYSCHI CQRRHPGQYD YFRNYNDLEM HFRKDHFLCE DDACLAKKFV VFQSDAEINR HNAMEHGGRM SRAQRNAALQ
0301: IPTSFMYQRN ERDQRRGRGR GRDAHHDRSD RDFSLPVDGS ATADHGLGSR LDSAGGSAML ADESLFPPLP GSSNKCSAST QQGLQGLPKT TLASRLQQSR
0401: EGTVKVLNSG RPQTAQNPEI VPHVSTSTHT RPTPERERNG SATAEHGLGS LVDSVAGPLQ SSSVSSASSR RSLGNGRVLE QLSFPHLQGR DIPDARMDAV
0501: SEETSFAPLS EQQSSNTLAL NQSSRGSERL GDVFLPLPGS SNKGSASTQQ GLQAFAKNKL ASRLEQPRKG TVKVLNSGRP QTAENPEIVP HVSTSTQTCP
0601: TPERERDGSA TAEHHGLGSL VDSVAGPLQS SSVNSASSGQ SLRNGGVLEQ LSFPPLGDQD IPDARMDGVP EKTSFPPLSE HQSKHALAVN QSSRGSAKHQ
0701: AKHAPAVNQS SRGSAKHQAK HAPAVNQSSR GSAKHQAKHA PAVNQSSRDS ARLGDESLFP PLPGLSNKGS ASTQQGLQSL AENTFASRLQ QPRKGAMKVL
0801: NSCRSQTAEN LEIVPDFSTS TEAWPTPDQG LHLSGSSHLR IVPQSTRDNG LMPPASSGSA WNSRAPIKMK HSVSTPNLVS GASSTQASSS RACGNKNQVP
0901: PQSSQPLPVA EDVRQANNAL VERMRAAFGM DEDRFSAFKE IASEYRHGVI GTSEYLSYVE QFGISHLVPE MAILLPDPLK QTELAEAYYA NMRSKSLKEN
1001: GSCETITLKE KLLQEGEAVV LSKDGYRSSR ERTPLSAGGD PVAISKASST SRFVGKGGGS SSSNNNSKQS KKTSKFLRAR LGDNSLAMLD FRHPDDVSPE
1101: GNVWKNGVAQ KLFSGSAKK
0101: MIRAMCRLSC SVCERIEADQ AGQAAAAQAK RGDSTFETIG LLRGHLSEKH GLRMCNLCLE GRKVFICQQK LYTQEQMARH TQTGDTEVDG SEVERGGFAG
0201: HPICEYCKRA FYGDNELYAH MTRDHYSCHI CQRRHPGQYD YFRNYNDLEM HFRKDHFLCE DDACLAKKFV VFQSDAEINR HNAMEHGGRM SRAQRNAALQ
0301: IPTSFMYQRN ERDQRRGRGR GRDAHHDRSD RDFSLPVDGS ATADHGLGSR LDSAGGSAML ADESLFPPLP GSSNKCSAST QQGLQGLPKT TLASRLQQSR
0401: EGTVKVLNSG RPQTAQNPEI VPHVSTSTHT RPTPERERNG SATAEHGLGS LVDSVAGPLQ SSSVSSASSR RSLGNGRVLE QLSFPHLQGR DIPDARMDAV
0501: SEETSFAPLS EQQSSNTLAL NQSSRGSERL GDVFLPLPGS SNKGSASTQQ GLQAFAKNKL ASRLEQPRKG TVKVLNSGRP QTAENPEIVP HVSTSTQTCP
0601: TPERERDGSA TAEHHGLGSL VDSVAGPLQS SSVNSASSGQ SLRNGGVLEQ LSFPPLGDQD IPDARMDGVP EKTSFPPLSE HQSKHALAVN QSSRGSAKHQ
0701: AKHAPAVNQS SRGSAKHQAK HAPAVNQSSR GSAKHQAKHA PAVNQSSRDS ARLGDESLFP PLPGLSNKGS ASTQQGLQSL AENTFASRLQ QPRKGAMKVL
0801: NSCRSQTAEN LEIVPDFSTS TEAWPTPDQG LHLSGSSHLR IVPQSTRDNG LMPPASSGSA WNSRAPIKMK HSVSTPNLVS GASSTQASSS RACGNKNQVP
0901: PQSSQPLPVA EDVRQANNAL VERMRAAFGM DEDRFSAFKE IASEYRHGVI GTSEYLSYVE QFGISHLVPE MAILLPDPLK QTELAEAYYA NMRSKSLKEN
1001: GSCETITLKE KLLQEGEAVV LSKDGYRSSR ERTPLSAGGD PVAISKASST SRFVGKGGGS SSSNNNSKQS KKTSKFLRAR LGDNSLAMLD FRHPDDVSPE
1101: GNVWKNGVAQ KLFSGSAKK
001: MDDSCAVCAE NLEWVGYGSC GHREVCSTCV VRLRFILNDR RCCICKTECP VVFVTKALGD YTKTISDFST TFPSVPKEGR VGSFWYHEET NVYFDDLNHY
101: TRIKAMCRLS CNLCNDTNKT RPKKEPNHCV RFKSVEHLKD HLNHQHKLHM CSLCLVGRKV FICEQKLFTK GQLNQHISSG DSEVDGSESE RGGFTGHPMC
201: EFCKRPFYGD NELYTHMSRE HYTCHICQRL KPGQYEYYGN YDDLEVHFRS DHFLCEDETC LAKKFIVFQI EAELKRHNAI DHGGRMSRSQ QNASLQIQAS
301: FQYPNSRRGR RRSSLREPNL VLLESQASYA FNDDNNLPQH VGRSGNSRLG ESSFPPLSVQ ANQGQSRFGQ NSESLVSNTT TTRQRHRANQ GQSRFGQNSE
401: SLVSNTTTTR QRHQTNRSAT SGSSQAWPAL NRGPAEISIT SRVQSSGASA QSQSRHHDRV ESTRTLASAV PQDARTTVGG CSSGSSLSSA NATKRNNHHS
501: SSTPKMSETR SLAQPSHSDS PQISAVKNRR SSSTSANAGN IQVAQGVSDV QSDNKSLVEK IHASLGHDEE LFMAFKNTSG KYRHGSIDAR TYLEYVKGYG
601: LSHLVLDMAR LCPDPQRQKE LIDTHNACLK GGNKGKAVKV ESSSDSKGDR FVDTVRKLQF SDKSQDKDKD KDAYRSDKGK TKVTTLVNSS SAGVGLGDTG
701: KQPKKTSKFL RTRLGEKSMA AVLDLRNSNP EPEPEPKNDN SKRSQNSPGG LPLRGAWKRG SAKLFV
101: TRIKAMCRLS CNLCNDTNKT RPKKEPNHCV RFKSVEHLKD HLNHQHKLHM CSLCLVGRKV FICEQKLFTK GQLNQHISSG DSEVDGSESE RGGFTGHPMC
201: EFCKRPFYGD NELYTHMSRE HYTCHICQRL KPGQYEYYGN YDDLEVHFRS DHFLCEDETC LAKKFIVFQI EAELKRHNAI DHGGRMSRSQ QNASLQIQAS
301: FQYPNSRRGR RRSSLREPNL VLLESQASYA FNDDNNLPQH VGRSGNSRLG ESSFPPLSVQ ANQGQSRFGQ NSESLVSNTT TTRQRHRANQ GQSRFGQNSE
401: SLVSNTTTTR QRHQTNRSAT SGSSQAWPAL NRGPAEISIT SRVQSSGASA QSQSRHHDRV ESTRTLASAV PQDARTTVGG CSSGSSLSSA NATKRNNHHS
501: SSTPKMSETR SLAQPSHSDS PQISAVKNRR SSSTSANAGN IQVAQGVSDV QSDNKSLVEK IHASLGHDEE LFMAFKNTSG KYRHGSIDAR TYLEYVKGYG
601: LSHLVLDMAR LCPDPQRQKE LIDTHNACLK GGNKGKAVKV ESSSDSKGDR FVDTVRKLQF SDKSQDKDKD KDAYRSDKGK TKVTTLVNSS SAGVGLGDTG
701: KQPKKTSKFL RTRLGEKSMA AVLDLRNSNP EPEPEPKNDN SKRSQNSPGG LPLRGAWKRG SAKLFV
Arabidopsis Description
Zinc ion binding/nucleic acid binding protein [Source:UniProtKB/TrEMBL;Acc:F4IK69]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.