Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003493.1-P | Field mustard | nucleus | 75.0 | 75.65 |
| GSMUA_Achr8P10850_001 | Banana | cytosol | 13.92 | 66.47 |
| AT2G47090.1 | Thale cress | nucleus | 48.77 | 51.7 |
| VIT_07s0005g02190.t01 | Wine grape | nucleus | 50.37 | 50.0 |
| KRH68317 | Soybean | nucleus | 50.12 | 48.92 |
| KRG96582 | Soybean | nucleus | 49.88 | 48.62 |
| Solyc01g068390.2.1 | Tomato | nucleus | 50.49 | 46.64 |
| PGSC0003DMT400046261 | Potato | nucleus | 50.25 | 46.36 |
| Zm00001d048205_P003 | Maize | nucleus | 32.64 | 44.39 |
| GSMUA_Achr5P20970_001 | Banana | nucleus | 37.93 | 43.32 |
| Zm00001d048207_P001 | Maize | nucleus | 30.3 | 42.56 |
| Os05t0279400-01 | Rice | plasma membrane | 44.7 | 42.56 |
| KXG39981 | Sorghum | nucleus | 43.47 | 42.28 |
| TraesCS1B01G154700.2 | Wheat | nucleus | 44.83 | 41.98 |
| TraesCS1A01G139500.1 | Wheat | nucleus | 44.21 | 41.94 |
| Zm00001d028020_P001 | Maize | nucleus | 42.73 | 41.16 |
| HORVU1Hr1G032900.1 | Barley | endoplasmic reticulum, mitochondrion, nucleus | 44.7 | 40.47 |
| TraesCS3B01G201500.1 | Wheat | nucleus | 34.73 | 39.83 |
| TraesCS3D01G176900.1 | Wheat | nucleus | 34.73 | 39.72 |
| HORVU3Hr1G034270.3 | Barley | nucleus, plastid | 35.1 | 36.92 |
| TraesCS3A01G164600.4 | Wheat | nucleus | 34.73 | 35.92 |
| Os01t0251200-01 | Rice | extracellular | 31.28 | 34.46 |
| TraesCS5A01G347000.1 | Wheat | nucleus | 38.92 | 29.37 |
| TraesCS5B01G347900.1 | Wheat | nucleus | 38.18 | 28.6 |
| TraesCS5D01G353400.1 | Wheat | nucleus | 38.42 | 27.88 |
| OQU89392 | Sorghum | cytosol, plasma membrane, vacuole | 5.17 | 19.91 |
| TraesCS2A01G156000.1 | Wheat | cytosol | 5.42 | 18.88 |
| TraesCS2D01G161800.1 | Wheat | cytosol | 5.42 | 18.88 |
| TraesCS2B01G181500.1 | Wheat | cytosol | 5.42 | 18.64 |
| OQU89393 | Sorghum | plasma membrane | 5.42 | 18.64 |
Protein Annotations
| MapMan:15.5.15 | EntrezGene:825397 | ProteinID:AEE80326.1 | ArrayExpress:AT3G62240 | EnsemblPlantsGene:AT3G62240 | RefSeq:AT3G62240 |
| TAIR:AT3G62240 | RefSeq:AT3G62240-TAIR-G | EnsemblPlants:AT3G62240.1 | TAIR:AT3G62240.1 | Unigene:At.43393 | EMBL:BT003337 |
| EMBL:BT010355 | ProteinID:CAB71884.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0005488 | InterPro:IPR001841 | InterPro:IPR013087 | RefSeq:NP_191783.1 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | ScanProsite:PS00028 | PFscan:PS50089 | PANTHER:PTHR22938 | PANTHER:PTHR22938:SF6 | UniProt:Q9M1Q0 |
| SMART:SM00355 | UniParc:UPI000000BFBE | InterPro:Znf_C2H2_type | InterPro:Znf_RING | SEG:seg | : |
Description
At3g62240 [Source:UniProtKB/TrEMBL;Acc:Q9M1Q0]
Coordinates
chr3:-:23033355..23036808
Molecular Weight (calculated)
90228.5 Da
IEP (calculated)
8.190
GRAVY (calculated)
-0.885
Length
812 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDSCAVCAD NLEWVAYGSC GHREVCSTCV VRLRFVLDDP RCCICKTESP IVFVTKALGD YTRTINDFST FPSAPREGRV GAFWYHEDTQ AFFDDLDQYR
101: MIKAMCRLSC GVCDKTEDKP REGGPRHHRQ RIKSVEQLKG HLYHKHKLHM CGLCLEGRKI FICEQKLYTR AQLNQHIQTG DSEVDGSESE RGGFAGHPMC
201: EFCRNPFYGD NELYTHMSTE HYTCHLCQRS QPGQYEYYKN YDDLEIHFRR DHFLCEDDSC LAKKFTVFQN ESELKRHNAI EHGGKMSRSQ RSAALQIPTS
301: FRYSRGNDQE NRRGRPRSFR REPGDEEYNL AVHAALRLSE SEYSRQEPAP PPSSAPPGFS ENNNIHVDDT DPLIQPMESL STTDMEPSSR YLQAVGSFGG
401: GGSRLGESAF PPLSGQQSSG QNVESLPTNT MAARLRRQTN RTSTASAIAS PSQGWPVINR GPGQASITSG GNHSSSGWPA IGRTPVQASS SSVQSRSHNR
501: VSQPRPLASA VPQAARNANR IPHSSSAPNL SDTRSLQPSH SDFPPVSSAV VQNRKTSSTT TQGSSNTQPP PDVQSANKSL IEKMRSALGH DEDVFVAFRN
601: ISGQYRQGSI DAKTYLEYVQ GYGLSHLVID LARLCPDPKR QKELIDTHNA SLREEDSKDN GRSAAQSSSQ PKESQSSKKN KGKAVKVVDP KETLADNFMD
701: TVRRLQSSQN PQEEEEEAIS KDKNTYRSDK GKSQVVGTDS SSTGSKQQRK KTSKFHRVRL GDGSMAALLD LNNSTRESEQ ESKDSNSNSN QNQTGGLPVR
801: GVWRKGGANL FS
101: MIKAMCRLSC GVCDKTEDKP REGGPRHHRQ RIKSVEQLKG HLYHKHKLHM CGLCLEGRKI FICEQKLYTR AQLNQHIQTG DSEVDGSESE RGGFAGHPMC
201: EFCRNPFYGD NELYTHMSTE HYTCHLCQRS QPGQYEYYKN YDDLEIHFRR DHFLCEDDSC LAKKFTVFQN ESELKRHNAI EHGGKMSRSQ RSAALQIPTS
301: FRYSRGNDQE NRRGRPRSFR REPGDEEYNL AVHAALRLSE SEYSRQEPAP PPSSAPPGFS ENNNIHVDDT DPLIQPMESL STTDMEPSSR YLQAVGSFGG
401: GGSRLGESAF PPLSGQQSSG QNVESLPTNT MAARLRRQTN RTSTASAIAS PSQGWPVINR GPGQASITSG GNHSSSGWPA IGRTPVQASS SSVQSRSHNR
501: VSQPRPLASA VPQAARNANR IPHSSSAPNL SDTRSLQPSH SDFPPVSSAV VQNRKTSSTT TQGSSNTQPP PDVQSANKSL IEKMRSALGH DEDVFVAFRN
601: ISGQYRQGSI DAKTYLEYVQ GYGLSHLVID LARLCPDPKR QKELIDTHNA SLREEDSKDN GRSAAQSSSQ PKESQSSKKN KGKAVKVVDP KETLADNFMD
701: TVRRLQSSQN PQEEEEEAIS KDKNTYRSDK GKSQVVGTDS SSTGSKQQRK KTSKFHRVRL GDGSMAALLD LNNSTRESEQ ESKDSNSNSN QNQTGGLPVR
801: GVWRKGGANL FS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.