Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- nucleus 2
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
25047395
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G201500.1 | Wheat | nucleus | 50.34 | 52.4 |
| TraesCS3D01G176900.1 | Wheat | nucleus | 49.8 | 51.69 |
| HORVU3Hr1G034270.3 | Barley | nucleus, plastid | 52.65 | 50.26 |
| TraesCS3A01G164600.4 | Wheat | nucleus | 50.07 | 47.01 |
| Zm00001d048205_P003 | Maize | nucleus | 35.69 | 44.05 |
| Zm00001d048207_P001 | Maize | nucleus | 33.24 | 42.39 |
| KXG39981 | Sorghum | nucleus | 45.05 | 39.76 |
| Zm00001d028020_P001 | Maize | nucleus | 44.64 | 39.03 |
| Os05t0279400-01 | Rice | plasma membrane | 44.78 | 38.69 |
| CDY37785 | Canola | nucleus | 29.99 | 35.3 |
| Bra004478.1-P | Field mustard | nucleus | 30.39 | 33.48 |
| CDX80080 | Canola | nucleus | 30.12 | 33.23 |
| KRG96582 | Soybean | nucleus | 36.5 | 32.29 |
| KRH68317 | Soybean | nucleus | 36.23 | 32.09 |
| VIT_07s0005g02190.t01 | Wine grape | nucleus | 35.55 | 32.03 |
| AT3G62240.1 | Thale cress | nucleus | 34.46 | 31.28 |
| Bra003493.1-P | Field mustard | nucleus | 33.51 | 30.68 |
| AT2G47090.1 | Thale cress | nucleus | 31.75 | 30.55 |
| PGSC0003DMT400046261 | Potato | nucleus | 35.69 | 29.89 |
| Solyc01g068390.2.1 | Tomato | nucleus | 35.14 | 29.47 |
Protein Annotations
| MapMan:15.5.15 | EntrezGene:4327105 | EMBL:AK063298 | ProteinID:BAD81222.1 | ProteinID:BAF04514.1 | ProteinID:BAS71350.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:IPR013087 | EnsemblPlantsGene:Os01g0251200 | EnsemblPlants:Os01t0251200-01 | PANTHER:PTHR22938 | PANTHER:PTHR22938:SF7 | UniProt:Q5NBD4 |
| SMART:SM00355 | UniParc:UPI000049E6DC | RefSeq:XP_015610883.1 | InterPro:Znf_C2H2_type | SEG:seg | : |
Description
Zinc finger, C2H2-like domain containing protein. (Os01t0251200-01);Hypothetical conserved gene. (Os01t0251200-02)
Coordinates
chr1:+:8297615..8302401
Molecular Weight (calculated)
81156.0 Da
IEP (calculated)
8.189
GRAVY (calculated)
-0.588
Length
737 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRALDWTPP LPASLLTTTP RRLLEPSSTF PLPLLRPSPP PPPPISPPPP PPPAAAELPA ADMDDACAVC AEPLEWVAYG ACAHREVCST CVARLRFVLR
101: DLRCCLCITP CPAVFVTKAM GDRTKVIPDF SALRGAGGEG KAGEYWHHEA TQTWFDDADQ YRMISAMCRL SCSVCDSNKE EEEERTGKAA KAKRKSKIRS
201: VDQLKGHLLD RHGLYMCDLC LEGRKVFICE QKLYTMSQLN QHIKSGDSEV DGSEVERRGF GGHPMCEFCK SPFYGDNELY THMTREHFSC HICQRQHSGQ
301: YDYFRNYDDL EMHFQRDHFL CEDKGCLEKK FVVFESEAEL KRHNGVEHGK HMPGAVDSSS SSMQNGIAAV GHGLGGQSDS SRVPLQSLSI SSSSGQSSET
401: RQSFARNRVL QQACVPPLSR QEVHDARVGS VLQEASFPSL PAQSRKAPAH SQSSRTAARI GDQQFRPLSV TSNRNVALAQ QGTRTLPENT HVSGLAQYSK
501: RTENMHQAVQ PQFLKNNSLI PSGSTSRPVH VPSSAGNERQ DTFSNSQVLS SVEDILAANK ALVEKMRAAL GMDQDMFNAF KEIAGEYRQG VINSSEYLSY
601: VKQFGLLHLV PEMARLLPDA QKQKELADAY YANLRLTSLQ ENGGGGTDNS KQGNQNKKGK GGVPDAIGTS NAATDPLKDK LLNTAIKFQS NYMPQEGCCG
701: VQRKEGRTTD GSSQGLPLKG AWQSRGGQRL FMSKAKK
101: DLRCCLCITP CPAVFVTKAM GDRTKVIPDF SALRGAGGEG KAGEYWHHEA TQTWFDDADQ YRMISAMCRL SCSVCDSNKE EEEERTGKAA KAKRKSKIRS
201: VDQLKGHLLD RHGLYMCDLC LEGRKVFICE QKLYTMSQLN QHIKSGDSEV DGSEVERRGF GGHPMCEFCK SPFYGDNELY THMTREHFSC HICQRQHSGQ
301: YDYFRNYDDL EMHFQRDHFL CEDKGCLEKK FVVFESEAEL KRHNGVEHGK HMPGAVDSSS SSMQNGIAAV GHGLGGQSDS SRVPLQSLSI SSSSGQSSET
401: RQSFARNRVL QQACVPPLSR QEVHDARVGS VLQEASFPSL PAQSRKAPAH SQSSRTAARI GDQQFRPLSV TSNRNVALAQ QGTRTLPENT HVSGLAQYSK
501: RTENMHQAVQ PQFLKNNSLI PSGSTSRPVH VPSSAGNERQ DTFSNSQVLS SVEDILAANK ALVEKMRAAL GMDQDMFNAF KEIAGEYRQG VINSSEYLSY
601: VKQFGLLHLV PEMARLLPDA QKQKELADAY YANLRLTSLQ ENGGGGTDNS KQGNQNKKGK GGVPDAIGTS NAATDPLKDK LLNTAIKFQS NYMPQEGCCG
701: VQRKEGRTTD GSSQGLPLKG AWQSRGGQRL FMSKAKK
001: MDDSCAVCAE NLEWVGYGSC GHREVCSTCV VRLRFILNDR RCCICKTECP VVFVTKALGD YTKTISDFST TFPSVPKEGR VGSFWYHEET NVYFDDLNHY
101: TRIKAMCRLS CNLCNDTNKT RPKKEPNHCV RFKSVEHLKD HLNHQHKLHM CSLCLVGRKV FICEQKLFTK GQLNQHISSG DSEVDGSESE RGGFTGHPMC
201: EFCKRPFYGD NELYTHMSRE HYTCHICQRL KPGQYEYYGN YDDLEVHFRS DHFLCEDETC LAKKFIVFQI EAELKRHNAI DHGGRMSRSQ QNASLQIQAS
301: FQYPNSRRGR RRSSLREPNL VLLESQASYA FNDDNNLPQH VGRSGNSRLG ESSFPPLSVQ ANQGQSRFGQ NSESLVSNTT TTRQRHQTNR SATSGSSQAW
401: PALNRGPAEI SITSRVQSSG ASAQSQSRHH DRVESTRTLA SAVPQDARTT VGGCSSGSSL SSANATKRNN HHSSSTPKMS ETRSLAQPSH SDSPQISAVK
501: NRRSSSTSAN AGNIQVAQGV SDVQSDNKSL VEKIHASLGH DEELFMAFKN TSGKYRHGSI DARTYLEYVK GYGLSHLVLD MARLCPDPQR QKELIDTHNA
601: CLKGGNKGKA VKVESSSDSK GDRFVDTVRK LQFSDKSQDK DKDKDAYRSD KGKTKVTTLV NSSSAGVGLG DTGKQPKKTS KFLRTRLGEK SMAAVLDLRN
701: SNPEPEPEPK NDNSKRSQNS PGGLPLRGAW KRGSAKLFV
101: TRIKAMCRLS CNLCNDTNKT RPKKEPNHCV RFKSVEHLKD HLNHQHKLHM CSLCLVGRKV FICEQKLFTK GQLNQHISSG DSEVDGSESE RGGFTGHPMC
201: EFCKRPFYGD NELYTHMSRE HYTCHICQRL KPGQYEYYGN YDDLEVHFRS DHFLCEDETC LAKKFIVFQI EAELKRHNAI DHGGRMSRSQ QNASLQIQAS
301: FQYPNSRRGR RRSSLREPNL VLLESQASYA FNDDNNLPQH VGRSGNSRLG ESSFPPLSVQ ANQGQSRFGQ NSESLVSNTT TTRQRHQTNR SATSGSSQAW
401: PALNRGPAEI SITSRVQSSG ASAQSQSRHH DRVESTRTLA SAVPQDARTT VGGCSSGSSL SSANATKRNN HHSSSTPKMS ETRSLAQPSH SDSPQISAVK
501: NRRSSSTSAN AGNIQVAQGV SDVQSDNKSL VEKIHASLGH DEELFMAFKN TSGKYRHGSI DARTYLEYVK GYGLSHLVLD MARLCPDPQR QKELIDTHNA
601: CLKGGNKGKA VKVESSSDSK GDRFVDTVRK LQFSDKSQDK DKDKDAYRSD KGKTKVTTLV NSSSAGVGLG DTGKQPKKTS KFLRTRLGEK SMAAVLDLRN
701: SNPEPEPEPK NDNSKRSQNS PGGLPLRGAW KRGSAKLFV
Arabidopsis Description
Zinc ion binding/nucleic acid binding protein [Source:UniProtKB/TrEMBL;Acc:F4IK69]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.