CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004478.1-P	Field mustard	nucleus	95.81	95.67
CDY37785	Canola	nucleus	88.02	93.93
GSMUA_Achr8P10850_001	Banana	cytosol	14.97	58.82
AT2G47090.1	Thale cress	nucleus	61.23	53.39
Zm00001d048205_P003	Maize	nucleus	35.33	39.53
Zm00001d048207_P001	Maize	nucleus	31.89	36.85
GSMUA_Achr5P20970_001	Banana	nucleus	39.07	36.71
VIT_07s0005g02190.t01	Wine grape	nucleus	44.76	36.55
KRH68317	Soybean	nucleus	45.51	36.54
KRG96582	Soybean	nucleus	44.91	36.01
TraesCS3B01G201500.1	Wheat	nucleus	37.13	35.03
CDX67884	Canola	nucleus	36.68	34.95
TraesCS3D01G176900.1	Wheat	nucleus	36.98	34.79
Os05t0279400-01	Rice	plasma membrane	44.31	34.7
Solyc01g068390.2.1	Tomato	nucleus	45.66	34.7
PGSC0003DMT400046261	Potato	nucleus	45.51	34.55
TraesCS1A01G139500.1	Wheat	nucleus	43.71	34.11
TraesCS1B01G154700.2	Wheat	nucleus	44.16	34.03
KXG39981	Sorghum	nucleus	42.07	33.65
HORVU1Hr1G032900.1	Barley	endoplasmic reticulum, mitochondrion, nucleus	43.71	32.55
Zm00001d028020_P001	Maize	nucleus	40.87	32.38
HORVU3Hr1G034270.3	Barley	nucleus, plastid	36.83	31.87
TraesCS3A01G164600.4	Wheat	nucleus	36.83	31.34
Os01t0251200-01	Rice	extracellular	33.23	30.12
TraesCS5A01G347000.1	Wheat	nucleus	38.77	24.07
TraesCS5B01G347900.1	Wheat	nucleus	38.92	23.99
TraesCS5D01G353400.1	Wheat	nucleus	38.47	22.97
OQU89392	Sorghum	cytosol, plasma membrane, vacuole	6.29	19.91
TraesCS2D01G161800.1	Wheat	cytosol	6.44	18.45
TraesCS2A01G156000.1	Wheat	cytosol	6.44	18.45
TraesCS2B01G181500.1	Wheat	cytosol	6.44	18.22
OQU89393	Sorghum	plasma membrane	5.84	16.53

Protein Annotations

MapMan:15.5.15	GO:A0A078CTE1	EnsemblPlants:CDX80080	ProteinID:CDX80080	ProteinID:CDX80080.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00132974001	InterPro:IPR001841	InterPro:IPR013087	ScanProsite:PS00028
PFscan:PS50089	PANTHER:PTHR22938	PANTHER:PTHR22938:SF6	SMART:SM00355	UniParc:UPI0004EEAC7E	InterPro:Znf_C2H2_type
InterPro:Znf_RING	SEG:seg	:	:	:	:

Description

BnaA05g00760D

Coordinates

chrLK031819:-:1726442..1728993

Molecular Weight (calculated)

74303.2 Da

IEP (calculated)

9.049

GRAVY (calculated)

-0.721

Length

668 amino acids

Sequence
(BLAST)

001: MDDCCAVCAE NLEWVAYGFC GHREVCSTCV VRLRFILGDR RCCICKTDCP IVFVTKEFGD YTKTITDFST FPTEPKEGRV GSFWYHEETK VFFDDFNQYT
101: KIKSMCRLSC TSCVSNHRMR FKSVEHLKNH LNHQHKLHMC SLCLVGRKVF ICEQKLFTKE QLNQHISSGD SEVDGSESER GGFTGHPMCE FCKRPFYGGN
201: ELYTHMSREH YTCHICQRLR PGQYEYYGNY DDLEAHFRSD HFLCEDESCL AKKFIVFQTE PELKRHNTVD HGGRMSRSQQ SASLQASGFQ VQSRRGRRRS
301: SQAPYDINDG YPLLQPMRSS GGSRLAESSF LPLSVQANRG VQTRFVQNSE INNLRHEANR SAAARSSQAW PALIRGPTQA SVPSSIQSSS ASAQSQSRTL
401: ASAQASVGGC SSGSSLNPCN AKRNHHTSST AKTSDTRSLE QPSHPGSPPA SAVKSDNKSL VDKIRSSLGH DEELFKAFKD TSGKYRHGSI DARTYLEYVK
501: GYGLSHLVLD MARLCPDPKR QKELIDTHNA CLKSSSQAKE SCGLKKNKGK AVKVESSSDS MGFKLQFSDK SQDEDKVKIQ KDKGKAVVDT SSGGGVGLGS
601: NTGKQFKKTP KFLRARLGEK PMAANLRSSS NTESEAESKN DDSKSSQSSP GGLQLRGAWR RGSAKLFS

Best Arabidopsis Sequence Match ( AT2G47090.4 )
(BLAST)

001: MDDSCAVCAE NLEWVGYGSC GHREVCSTCV VRLRFILNDR RCCICKTECP VVFVTKALGD YTKTISDFST TFPSVPKEGR VGSFWYHEET NVYFDDLNHY
101: TRIKAMCRLS CNLCNDTNKT RPKKEPNHCV RFKSVEHLKD HLNHQHKLHM CSLCLVGRKV FICEQKLFTK GQLNQHISSG DSEVDGSESE RGGFTGHPMC
201: EFCKRPFYGD NELYTHMSRE HYTCHICQRL KPGQYEYYGN YDDLEVHFRS DHFLCEDETC LAKKFIVFQI EAELKRHNAI DHGGRMSRSQ QNASLQIQAS
301: FQYPNSRRGR RRSSLREPNL VLLESQASYA FNDDNNLPQH VGRSGNSRLG ESSFPPLSVQ ANQGQSRFGQ NSESLVSNTT TTRQRHQTNR SATSGSSQAW
401: PALNRGPAEI SITSRVQSSG ASAQSQSRHH DRVESTRTLA SAVPQDARTT VGGCSSGSSL SSANATKRNN HHSSSTPKMS ETRSLAQPSH SDSPQISAVK
501: NRRSSSTSAN AGNIQVAQGV SDVQSDNKSL VEKIHASLGH DEELFMAFKN TSGKYRHGSI DARTYLEYVK GYGLSHLVLD MARLCPDPQR QKELIDTHNA
601: CLKGGNKGKA VKVESSSDSK GDRFVDTVRK LQFSDKSQDK DKDKDAYRSD KGKTKVTTLV NSSSAGVGLG DTGKQPKKTS KFLRTRLGEK SMAAVLDLRN
701: SNPEPEPEPK NDNSKRSQNS PGGLPLRGAW KRGSAKLFV

Arabidopsis Description

Zinc ion binding/nucleic acid binding protein [Source:UniProtKB/TrEMBL;Acc:F4IK69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.