Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G176900.1 | Wheat | nucleus | 88.66 | 98.03 |
| TraesCS3B01G201500.1 | Wheat | nucleus | 87.52 | 97.03 |
| HORVU3Hr1G034270.3 | Barley | nucleus, plastid | 74.52 | 75.78 |
| Os01t0251200-01 | Rice | extracellular | 47.01 | 50.07 |
| Zm00001d048205_P003 | Maize | nucleus | 37.32 | 49.08 |
| Zm00001d048207_P001 | Maize | nucleus | 34.39 | 46.71 |
| KXG39981 | Sorghum | nucleus | 46.5 | 43.71 |
| TraesCS1A01G139500.1 | Wheat | nucleus | 47.39 | 43.46 |
| Zm00001d028020_P001 | Maize | nucleus | 45.86 | 42.7 |
| CDY37785 | Canola | nucleus | 31.21 | 39.14 |
| VIT_07s0005g02190.t01 | Wine grape | nucleus | 38.6 | 37.04 |
| Bra004478.1-P | Field mustard | nucleus | 31.46 | 36.92 |
| CDX80080 | Canola | nucleus | 31.34 | 36.83 |
| AT2G47090.1 | Thale cress | nucleus | 34.9 | 35.77 |
| KRH68317 | Soybean | nucleus | 37.83 | 35.7 |
| KRG96582 | Soybean | nucleus | 37.32 | 35.17 |
| Solyc01g068390.2.1 | Tomato | nucleus | 39.11 | 34.93 |
| Bra003493.1-P | Field mustard | nucleus | 35.67 | 34.78 |
| PGSC0003DMT400046261 | Potato | nucleus | 38.98 | 34.77 |
| AT3G62240.1 | Thale cress | nucleus | 35.92 | 34.73 |
| TraesCS5A01G347000.1 | Wheat | nucleus | 42.93 | 31.32 |
| TraesCS2A01G156000.1 | Wheat | cytosol | 5.22 | 17.6 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G164600.4 | EnsemblPlantsGene:TraesCS3A01G164600 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR001841 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_type | InterPro:Znf_RING | PANTHER:PTHR22938 | PANTHER:PTHR22938:SF7 | PFscan:PS50089 |
| SEG:seg | SMART:SM00355 | TIGR:cd16615 | MapMan:15.5.15 | : | : |
Description
No Description!
Coordinates
chr3A:-:169845335..169850836
Molecular Weight (calculated)
87010.0 Da
IEP (calculated)
9.209
GRAVY (calculated)
-0.635
Length
785 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDACAVCAE RLEWVAYGAC GHREVCSACV TRLRFVLRDQ RCCLCMTHCP AVFATKEMGD RTKAIGDLSA LPAAAGEGKT GDYWYHEATQ VWFDDADHYR
101: MVRAICRISC TVCESSGNKG KKGSKSSKAK HKIKFETIEQ LKAHLSNKHC LYMCDLCLDG RKVFICEQKL YTRPQLNQHI KTGDSEVDGS EVERRGFAGH
201: PMCKFCRSPF YGETELDTHL TREHYSCHIC QRQHGGQDDY FRNYDDLETA AGAVVHMLHS RASGTRRVAP RHALMSLTVR TYMQQKWYGA PKVRLCMHLN
301: GRRVYICSTR TCHLHARPLQ ACEMHFRRDH FFCEDRECLE KKFIVFQSEA ELKRHNAVEH RKRMPHAQKN SALQTPTSSR DRSELEQSNG RGRRHNACLP
401: NGSVDNTLLS VQNGIANMGR GSGNQVAAVV SPLRSSSGHS SQAGQSSGMN RVWQQPHFPP LSRQEVPDAR IGSCFQEAPS PPISGQSGYT PFASRSSRTA
501: ARAMDLEFPP LSGSNNRTAA STEQGVRKVA ENTHAFGLRQ QSNGIVNTHH SAQHWSLKNT DLIPSGSSHS PSWPTPNTSP HVSGSLSLTS AGNGRQETPV
601: SRQVLCSVDD VRAANNSLVE RMQAALGMDR DRYSMFKEIS GEYRQGVINA SKYLSYVEQF GLSHLVLEMS RLLPDPQKQK ELADAYYANL RLTSLQGNGG
701: GGAVCSKEST RKNKGKGKLP AAAQDLLEDK LLSAASKLQS QVGGSRAPLR EGCGAADGPL QEPRWPVKGA WQNRGGQRLV SKAKK
101: MVRAICRISC TVCESSGNKG KKGSKSSKAK HKIKFETIEQ LKAHLSNKHC LYMCDLCLDG RKVFICEQKL YTRPQLNQHI KTGDSEVDGS EVERRGFAGH
201: PMCKFCRSPF YGETELDTHL TREHYSCHIC QRQHGGQDDY FRNYDDLETA AGAVVHMLHS RASGTRRVAP RHALMSLTVR TYMQQKWYGA PKVRLCMHLN
301: GRRVYICSTR TCHLHARPLQ ACEMHFRRDH FFCEDRECLE KKFIVFQSEA ELKRHNAVEH RKRMPHAQKN SALQTPTSSR DRSELEQSNG RGRRHNACLP
401: NGSVDNTLLS VQNGIANMGR GSGNQVAAVV SPLRSSSGHS SQAGQSSGMN RVWQQPHFPP LSRQEVPDAR IGSCFQEAPS PPISGQSGYT PFASRSSRTA
501: ARAMDLEFPP LSGSNNRTAA STEQGVRKVA ENTHAFGLRQ QSNGIVNTHH SAQHWSLKNT DLIPSGSSHS PSWPTPNTSP HVSGSLSLTS AGNGRQETPV
601: SRQVLCSVDD VRAANNSLVE RMQAALGMDR DRYSMFKEIS GEYRQGVINA SKYLSYVEQF GLSHLVLEMS RLLPDPQKQK ELADAYYANL RLTSLQGNGG
701: GGAVCSKEST RKNKGKGKLP AAAQDLLEDK LLSAASKLQS QVGGSRAPLR EGCGAADGPL QEPRWPVKGA WQNRGGQRLV SKAKK
001: MDDSCAVCAE NLEWVGYGSC GHREVCSTCV VRLRFILNDR RCCICKTECP VVFVTKALGD YTKTISDFST TFPSVPKEGR VGSFWYHEET NVYFDDLNHY
101: TRIKAMCRLS CNLCNDTNKT RPKKEPNHCV RFKSVEHLKD HLNHQHKLHM CSLCLVGRKV FICEQKLFTK GQLNQHISSG DSEVDGSESE RGGFTGHPMC
201: EFCKRPFYGD NELYTHMSRE HYTCHICQRL KPGQYEYYGN YDDLEVHFRS DHFLCEDETC LAKKFIVFQI EAELKRHNAI DHGGRMSRSQ QNASLQIQAS
301: FQYPNSRRGR RRSSLREPNL VLLESQASYA FNDDNNLPQH VGRSGNSRLG ESSFPPLSVQ ANQGQSRFGQ NSESLVSNTT TTRQRHRANQ GQSRFGQNSE
401: SLVSNTTTTR QRHQTNRSAT SGSSQAWPAL NRGPAEISIT SRVQSSGASA QSQSRHHDRV ESTRTLASAV PQDARTTVGG CSSGSSLSSA NATKRNNHHS
501: SSTPKMSETR SLAQPSHSDS PQISAVKNRR SSSTSANAGN IQVAQGVSDV QSDNKSLVEK IHASLGHDEE LFMAFKNTSG KYRHGSIDAR TYLEYVKGYG
601: LSHLVLDMAR LCPDPQRQKE LIDTHNACLK GGNKGKAVKV ESSSDSKGDR FVDTVRKLQF SDKSQDKDKD KDAYRSDKGK TKVTTLVNSS SAGVGLGDTG
701: KQPKKTSKFL RTRLGEKSMA AVLDLRNSNP EPEPEPKNDN SKRSQNSPGG LPLRGAWKRG SAKLFV
101: TRIKAMCRLS CNLCNDTNKT RPKKEPNHCV RFKSVEHLKD HLNHQHKLHM CSLCLVGRKV FICEQKLFTK GQLNQHISSG DSEVDGSESE RGGFTGHPMC
201: EFCKRPFYGD NELYTHMSRE HYTCHICQRL KPGQYEYYGN YDDLEVHFRS DHFLCEDETC LAKKFIVFQI EAELKRHNAI DHGGRMSRSQ QNASLQIQAS
301: FQYPNSRRGR RRSSLREPNL VLLESQASYA FNDDNNLPQH VGRSGNSRLG ESSFPPLSVQ ANQGQSRFGQ NSESLVSNTT TTRQRHRANQ GQSRFGQNSE
401: SLVSNTTTTR QRHQTNRSAT SGSSQAWPAL NRGPAEISIT SRVQSSGASA QSQSRHHDRV ESTRTLASAV PQDARTTVGG CSSGSSLSSA NATKRNNHHS
501: SSTPKMSETR SLAQPSHSDS PQISAVKNRR SSSTSANAGN IQVAQGVSDV QSDNKSLVEK IHASLGHDEE LFMAFKNTSG KYRHGSIDAR TYLEYVKGYG
601: LSHLVLDMAR LCPDPQRQKE LIDTHNACLK GGNKGKAVKV ESSSDSKGDR FVDTVRKLQF SDKSQDKDKD KDAYRSDKGK TKVTTLVNSS SAGVGLGDTG
701: KQPKKTSKFL RTRLGEKSMA AVLDLRNSNP EPEPEPKNDN SKRSQNSPGG LPLRGAWKRG SAKLFV
Arabidopsis Description
Zinc ion binding/nucleic acid binding protein [Source:UniProtKB/TrEMBL;Acc:F4IK69]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.