Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P10850_001 | Banana | cytosol | 14.43 | 69.41 |
| KRH68317 | Soybean | nucleus | 62.71 | 61.66 |
| KRG96582 | Soybean | nucleus | 62.1 | 60.98 |
| AT3G62240.1 | Thale cress | nucleus | 50.0 | 50.37 |
| Bra003493.1-P | Field mustard | nucleus | 49.39 | 50.19 |
| Zm00001d048205_P003 | Maize | nucleus | 35.57 | 48.74 |
| KXG39981 | Sorghum | nucleus | 49.27 | 48.26 |
| Os05t0279400-01 | Rice | plasma membrane | 50.12 | 48.07 |
| Zm00001d028020_P001 | Maize | nucleus | 49.14 | 47.69 |
| Zm00001d048207_P001 | Maize | nucleus | 33.13 | 46.89 |
| TraesCS1B01G154700.2 | Wheat | nucleus | 49.51 | 46.71 |
| TraesCS1A01G139500.1 | Wheat | nucleus | 48.78 | 46.61 |
| AT2G47090.1 | Thale cress | nucleus | 43.28 | 46.21 |
| GSMUA_Achr5P20970_001 | Banana | nucleus | 39.98 | 45.99 |
| CDY37785 | Canola | nucleus | 34.47 | 45.05 |
| Bra004478.1-P | Field mustard | nucleus | 36.67 | 44.84 |
| CDX80080 | Canola | nucleus | 36.55 | 44.76 |
| HORVU1Hr1G032900.1 | Barley | endoplasmic reticulum, mitochondrion, nucleus | 49.02 | 44.7 |
| TraesCS3B01G201500.1 | Wheat | nucleus | 37.29 | 43.08 |
| TraesCS3D01G176900.1 | Wheat | nucleus | 37.29 | 42.96 |
| TraesCS3A01G164600.4 | Wheat | nucleus | 37.04 | 38.6 |
| HORVU3Hr1G034270.3 | Barley | nucleus, plastid | 36.06 | 38.21 |
| Os01t0251200-01 | Rice | extracellular | 32.03 | 35.55 |
| TraesCS5A01G347000.1 | Wheat | nucleus | 43.03 | 32.71 |
| TraesCS5B01G347900.1 | Wheat | nucleus | 42.79 | 32.29 |
| TraesCS5D01G353400.1 | Wheat | nucleus | 43.03 | 31.46 |
| OQU89392 | Sorghum | cytosol, plasma membrane, vacuole | 4.77 | 18.48 |
| TraesCS2A01G156000.1 | Wheat | cytosol | 5.26 | 18.45 |
| TraesCS2D01G161800.1 | Wheat | cytosol | 5.26 | 18.45 |
| TraesCS2B01G181500.1 | Wheat | cytosol | 5.26 | 18.22 |
| OQU89393 | Sorghum | plasma membrane | 4.77 | 16.53 |
Protein Annotations
| EntrezGene:100262296 | wikigene:100262296 | MapMan:15.5.15 | EMBL:AM465713 | ProteinID:CAN77099 | ProteinID:CAN77099.1 |
| ProteinID:CCB60054 | ProteinID:CCB60054.1 | UniProt:F6HZD9 | EMBL:FN596502 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR001841 | InterPro:IPR013087 | EntrezGene:LOC100262296 | wikigene:LOC100262296 | PFscan:PS50089 |
| PANTHER:PTHR22938 | PANTHER:PTHR22938:SF6 | SMART:SM00355 | UniParc:UPI000210A54C | ArrayExpress:VIT_07s0005g02190 | EnsemblPlantsGene:VIT_07s0005g02190 |
| EnsemblPlants:VIT_07s0005g02190.t01 | RefSeq:XP_003632382 | RefSeq:XP_003632382.1 | InterPro:Znf_C2H2_type | InterPro:Znf_RING | SEG:seg |
Description
No Description!
Coordinates
chr7:+:4578933..4584656
Molecular Weight (calculated)
90550.8 Da
IEP (calculated)
7.902
GRAVY (calculated)
-0.665
Length
818 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDSCAVCAE TLEWVSYGPC GHRDVCSTCV ARLRFICDDR RCCICKTECN VVFVTKALGD YTRMVNDFSI LPTESREGQV GMYWYHEDTQ AFFDDVDHYK
101: MIKAMCRLSC SVCDQMEEQS NDGSKRRQKF RNIDQLKGHL FHRHKLFMCS LCLEGRKVFI CEQKLYNRAQ LNQHINTGDS EVDGNEAERG GFMGHPMCDF
201: CRSPFYGDNE LYSHMSTEHY TCHICQRQNP GQFEYYKNYD DLEIHFRRDH FLCEDEACLA KKFVVFQSEA EMKRHNAIEH GGRMSRSKRN AALQIPTSFR
301: YRRSTEQDQR RGRGRTFNRD SSADQLSLAI QASLETANAN DTYHDPPPSS SSSTQAVSDH YDSDPIIQPF ESLAMTDSES SSRYRQALGH NPMNVPLVES
401: FFPPLATAPS SSLPKPKLDS EGLPKNTMAA RLRRQGKANV LHSGQGWPAP NRGSVPLSSS STQSKVANIA PVPSSSLDQV KSATGSGSAP NSYASFAQAR
501: PTTVHGFASS GSSSNSGSIS RISHSASAPN LADSRSFDPS MSDFPPVSAT QKQKLPTITQ PVLNAEAVHT ANKSLVEKIR AALEFDEDKY TAFKDISGQY
601: RQGSIDTAVY LAYVQQFGLS HLVLELARLC PDAQKQKELL ETYNASVRSS GLQENGWGHS NVHFKDKKIS KKGKGKPVVV EDSNVKDTLA DNIINTVRNL
701: RSTFKPSEEE VEVLSKDGYR GAKGKSKGVP SAGGGSNQNL GAVSGGSQRR KKASKFLRAR LGDGSVGALL NSQDPDPDPD PVEETLDANM NPAEGLPVHG
801: VWRNGGGQRL FSNGQKRF
101: MIKAMCRLSC SVCDQMEEQS NDGSKRRQKF RNIDQLKGHL FHRHKLFMCS LCLEGRKVFI CEQKLYNRAQ LNQHINTGDS EVDGNEAERG GFMGHPMCDF
201: CRSPFYGDNE LYSHMSTEHY TCHICQRQNP GQFEYYKNYD DLEIHFRRDH FLCEDEACLA KKFVVFQSEA EMKRHNAIEH GGRMSRSKRN AALQIPTSFR
301: YRRSTEQDQR RGRGRTFNRD SSADQLSLAI QASLETANAN DTYHDPPPSS SSSTQAVSDH YDSDPIIQPF ESLAMTDSES SSRYRQALGH NPMNVPLVES
401: FFPPLATAPS SSLPKPKLDS EGLPKNTMAA RLRRQGKANV LHSGQGWPAP NRGSVPLSSS STQSKVANIA PVPSSSLDQV KSATGSGSAP NSYASFAQAR
501: PTTVHGFASS GSSSNSGSIS RISHSASAPN LADSRSFDPS MSDFPPVSAT QKQKLPTITQ PVLNAEAVHT ANKSLVEKIR AALEFDEDKY TAFKDISGQY
601: RQGSIDTAVY LAYVQQFGLS HLVLELARLC PDAQKQKELL ETYNASVRSS GLQENGWGHS NVHFKDKKIS KKGKGKPVVV EDSNVKDTLA DNIINTVRNL
701: RSTFKPSEEE VEVLSKDGYR GAKGKSKGVP SAGGGSNQNL GAVSGGSQRR KKASKFLRAR LGDGSVGALL NSQDPDPDPD PVEETLDANM NPAEGLPVHG
801: VWRNGGGQRL FSNGQKRF
001: MDDSCAVCAD NLEWVAYGSC GHREVCSTCV VRLRFVLDDP RCCICKTESP IVFVTKALGD YTRTINDFST FPSAPREGRV GAFWYHEDTQ AFFDDLDQYR
101: MIKAMCRLSC GVCDKTEDKP REGGPRHHRQ RIKSVEQLKG HLYHKHKLHM CGLCLEGRKI FICEQKLYTR AQLNQHIQTG DSEVDGSESE RGGFAGHPMC
201: EFCRNPFYGD NELYTHMSTE HYTCHLCQRS QPGQYEYYKN YDDLEIHFRR DHFLCEDDSC LAKKFTVFQN ESELKRHNAI EHGGKMSRSQ RSAALQIPTS
301: FRYSRGNDQE NRRGRPRSFR REPGDEEYNL AVHAALRLSE SEYSRQEPAP PPSSAPPGFS ENNNIHVDDT DPLIQPMESL STTDMEPSSR YLQAVGSFGG
401: GGSRLGESAF PPLSGQQSSG QNVESLPTNT MAARLRRQTN RTSTASAIAS PSQGWPVINR GPGQASITSG GNHSSSGWPA IGRTPVQASS SSVQSRSHNR
501: VSQPRPLASA VPQAARNANR IPHSSSAPNL SDTRSLQPSH SDFPPVSSAV VQNRKTSSTT TQGSSNTQPP PDVQSANKSL IEKMRSALGH DEDVFVAFRN
601: ISGQYRQGSI DAKTYLEYVQ GYGLSHLVID LARLCPDPKR QKELIDTHNA SLREEDSKDN GRSAAQSSSQ PKESQSSKKN KGKAVKVVDP KETLADNFMD
701: TVRRLQSSQN PQEEEEEAIS KDKNTYRSDK GKSQVVGTDS SSTGSKQQRK KTSKFHRVRL GDGSMAALLD LNNSTRESEQ ESKDSNSNSN QNQTGGLPVR
801: GVWRKGGANL FS
101: MIKAMCRLSC GVCDKTEDKP REGGPRHHRQ RIKSVEQLKG HLYHKHKLHM CGLCLEGRKI FICEQKLYTR AQLNQHIQTG DSEVDGSESE RGGFAGHPMC
201: EFCRNPFYGD NELYTHMSTE HYTCHLCQRS QPGQYEYYKN YDDLEIHFRR DHFLCEDDSC LAKKFTVFQN ESELKRHNAI EHGGKMSRSQ RSAALQIPTS
301: FRYSRGNDQE NRRGRPRSFR REPGDEEYNL AVHAALRLSE SEYSRQEPAP PPSSAPPGFS ENNNIHVDDT DPLIQPMESL STTDMEPSSR YLQAVGSFGG
401: GGSRLGESAF PPLSGQQSSG QNVESLPTNT MAARLRRQTN RTSTASAIAS PSQGWPVINR GPGQASITSG GNHSSSGWPA IGRTPVQASS SSVQSRSHNR
501: VSQPRPLASA VPQAARNANR IPHSSSAPNL SDTRSLQPSH SDFPPVSSAV VQNRKTSSTT TQGSSNTQPP PDVQSANKSL IEKMRSALGH DEDVFVAFRN
601: ISGQYRQGSI DAKTYLEYVQ GYGLSHLVID LARLCPDPKR QKELIDTHNA SLREEDSKDN GRSAAQSSSQ PKESQSSKKN KGKAVKVVDP KETLADNFMD
701: TVRRLQSSQN PQEEEEEAIS KDKNTYRSDK GKSQVVGTDS SSTGSKQQRK KTSKFHRVRL GDGSMAALLD LNNSTRESEQ ESKDSNSNSN QNQTGGLPVR
801: GVWRKGGANL FS
Arabidopsis Description
At3g62240 [Source:UniProtKB/TrEMBL;Acc:Q9M1Q0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.