Factsheet for TraesCS2D01G161800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G181500.1	Wheat	cytosol	73.39	72.46
TraesCS2A01G156000.1	Wheat	cytosol	66.09	66.09
OQU89392	Sorghum	cytosol, plasma membrane, vacuole	20.6	22.75
OQU89393	Sorghum	plasma membrane	20.6	20.34
CDY37785	Canola	nucleus	18.45	6.87
GSMUA_Achr5P20970_001	Banana	nucleus	20.6	6.75
CDX80080	Canola	nucleus	18.45	6.44
Bra004478.1-P	Field mustard	nucleus	18.45	6.43
TraesCS3D01G176900.1	Wheat	nucleus	17.6	5.77
AT2G47090.1	Thale cress	nucleus	18.03	5.48
AT3G62240.1	Thale cress	nucleus	18.88	5.42
KRH68317	Soybean	nucleus	19.31	5.41
Bra003493.1-P	Field mustard	nucleus	18.45	5.34
VIT_07s0005g02190.t01	Wine grape	nucleus	18.45	5.26
KRG96582	Soybean	nucleus	17.6	4.92
Solyc01g068390.2.1	Tomato	nucleus	17.6	4.66
PGSC0003DMT400046261	Potato	nucleus	17.17	4.55
TraesCS5D01G353400.1	Wheat	nucleus	20.17	4.2

Protein Annotations

EnsemblPlants:TraesCS2D01G161800.1	EnsemblPlantsGene:TraesCS2D01G161800	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22938	PANTHER:PTHR22938:SF7	PFAM:PF13920	PFscan:PS50089	SUPFAM:SSF57850
TMHMM:TMhelix	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr2D:-:106624658..106625359

Molecular Weight (calculated)

24510.0 Da

IEP (calculated)

6.216

GRAVY (calculated)

-0.128

Length

233 amino acids

Sequence
(BLAST)

001: MAQVDGGHAI DMDVGGGAKH TGPLADHQLA SPSNPSHVID IDVGGAKRVG DKLATPADPR HAVDVDAAPS EPSECGVCME PLEWVAIGPC GHREVCSDCA
101: VRMRVGSKPQ HASRRCCICR EPCPTVLVTR SGGGGPRACP RLPPLGAFQG PVGGYWYHSG SAAYFDDEQQ FLAARRAYSK VEDGARDEGD GFAPACPWPC
201: SPLATGLFYV ALFLWVGFMV GVNAGVIPYW GAH

Best Arabidopsis Sequence Match ( AT2G47090.1 )
(BLAST)

001: MDDSCAVCAE NLEWVGYGSC GHREVCSTCV VRLRFILNDR RCCICKTECP VVFVTKALGD YTKTISDFST TFPSVPKEGR VGSFWYHEET NVYFDDLNHY
101: TRIKAMCRLS CNLCNDTNKT RPKKEPNHCV RFKSVEHLKD HLNHQHKLHM CSLCLVGRKV FICEQKLFTK GQLNQHISSG DSEVDGSESE RGGFTGHPMC
201: EFCKRPFYGD NELYTHMSRE HYTCHICQRL KPGQYEYYGN YDDLEVHFRS DHFLCEDETC LAKKFIVFQI EAELKRHNAI DHGGRMSRSQ QNASLQIQAS
301: FQYPNSRRGR RRSSLREPNL VLLESQASYA FNDDNNLPQH VGRSGNSRLG ESSFPPLSVQ ANQGQSRFGQ NSESLVSNTT TTRQRHRANQ GQSRFGQNSE
401: SLVSNTTTTR QRHQTNRSAT SGSSQAWPAL NRGPAEISIT SRVQSSGASA QSQSRHHDRV ESTRTLASAV PQDARTTVGG CSSGSSLSSA NATKRNNHHS
501: SSTPKMSETR SLAQPSHSDS PQISAVKNRR SSSTSANAGN IQVAQGVSDV QSDNKSLVEK IHASLGHDEE LFMAFKNTSG KYRHGSIDAR TYLEYVKGYG
601: LSHLVLDMAR LCPDPQRQKE LIDTHNACLK GGNKGKAVKV ESSSDSKGDR FVDTVRKLQF SDKSQDKDKD KDAYRSDKGK TKVTTLVNSS SAGVGLGDTG
701: KQPKKTSKFL RTRLGEKSMA AVLDLRNSNP EPEPEPKNDN SKRSQNSPGG LPLRGAWKRG SAKLFV

Arabidopsis Description

Zinc ion binding/nucleic acid binding protein [Source:UniProtKB/TrEMBL;Acc:F4IK69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.